Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2389 ATGATGGAGGATGGTGACAGATTAGGGGATAACTCTCATGGAAATTGCGATATGGAGGTTGTTGATGATGCCGCCGCTTTGCAACGCCAGCATTCTACCCTCTCGGAAAAGGATCAGAACGTGGATTCCACTCCTCATGTGTCTGCTTCTAAGTCCCCTGCTCAGCTGCAAGTACAGCAAGATCAAATGATGGTTGACGACAACAAAAATGGCGATTCTACCCTTGTTCATGTGCCAGAGACCAAGATAGGTAGTGACAATACACACCACCAGAATCAGCTTGAGGATGCTAAAACCCCTTCGCACCAGGAACTGGTCACTCCGAAGCCTAAAGAAAGGAACGTTAGGGAAATGAAGAATGTGATGAATGATACCGAGATGACTGAGTACGATGAGTCTGGTTCGTTTTCGGAACGAGAAGCATTTATGAAAGAACTGGAGACTTTCTACAGAGAGAGGTCTTTGGAATTCAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGCTATGGAGAGCTGTTATCAGACTAGGTGGCTATGACGTGGTAACTGCATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACTTGCACAACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAGAAGTATAAGAGAGAAATTGGGGAGCTGCAGCTCCCTGTTGGATCATTCCATCAGTCTTCAAGCGTGGAGAAAGAGACTGTTTCTCAGGCTGCAGGCTCTGGCTCTGGCAGGGCACGGAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCCGAGCCAGTAATTAAGGATAAGAACTTCAGTTCCACTCCAAAACGTGAAAAGAATCTCAAAAGTATTGGTGTGATTAATAAACAGAGGACGCCATCTGGTCTTGAGCATGCTGAGAAAGCTGCAAATATCGAAGGAGATAGACAATTGGCCACGGCAATTGTGGATGTTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATTGTTTTGAGGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTCTGCCAGAGCAGGTTGACAATCCATGGGGAATTACCCCTTTCAAAAAGGTTGTGAACTTACCGGCAAGAATTGATCCGCTTCAGACATCTGCTGTCGTTAGTTTGCATGGCCGGCTATTTGTACGTGTTCCCTTTGAGCAGGGAGCTGTGTAA 1314 0.4726 MMEDGDRLGDNSHGNCDMEVVDDAAALQRQHSTLSEKDQNVDSTPHVSASKSPAQLQVQQDQMMVDDNKNGDSTLVHVPETKIGSDNTHHQNQLEDAKTPSHQELVTPKPKERNVREMKNVMNDTEMTEYDESGSFSEREAFMKELETFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKREIGELQLPVGSFHQSSSVEKETVSQAAGSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGVINKQRTPSGLEHAEKAANIEGDRQLATAIVDVGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEQVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2389 437 MobiDBLite consensus disorder prediction 1 57 - -
Dod09g2389 437 Pfam ARID/BRIGHT DNA binding domain 138 223 IPR001606 GO:0003677
Dod09g2389 437 SMART ARID_2 133 223 - -
Dod09g2389 437 MobiDBLite consensus disorder prediction 82 109 - -
Dod09g2389 437 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 36 434 - -
Dod09g2389 437 MobiDBLite consensus disorder prediction 28 57 - -
Dod09g2389 437 CDD ARID 138 223 - -
Dod09g2389 437 ProSiteProfiles ARID domain profile. 136 227 IPR001606 GO:0003677
Dod09g2389 437 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 336 437 IPR002068 -
Dod09g2389 437 Gene3D - 136 234 IPR036431 GO:0003677
Dod09g2389 437 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 36 434 IPR045147 GO:0006357
Dod09g2389 437 SMART bright_3 137 228 IPR001606 GO:0003677
Dod09g2389 437 CDD ACD_sHsps_p23-like 352 431 - -
Dod09g2389 437 MobiDBLite consensus disorder prediction 1 17 - -
Dod09g2389 437 Pfam Hsp20/alpha crystallin family 352 433 IPR002068 -
Dod09g2389 437 SUPERFAMILY ARID-like 127 234 IPR036431 GO:0003677
Dod09g2389 437 Gene3D - 336 436 IPR008978 -
Dod09g2389 437 SUPERFAMILY HSP20-like chaperones 345 432 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2389 Dod-Chr9 45076250 45082928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2389 19 434 ARID Transcription Factor Family AT1G76510 60.570 3.58e-162 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dod09g2389 ARID 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2389 - - adu:107461292 698.353