Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2378 ATGACTCGTCACTTGAGGATTTTAGGCGAGACCAACTCGTCCGCCTCCGTCTCGCCGGATTCCGCCGTCGTCGACTCCGATTTTGTGGTCATCCTGGCCGCCCTCATCTGCGCCCTCATCTGCGTCCTCGGCCTCGTCGCCGTCGCCCGCTGTGCCTGTCTCCGCCGCCTCCGCCTCTCTTCCTCCTCCGACGCCCAGCCTCCTCCTCCGCTTCCCGCCGCCGCCAACAAAGGCGTCAAGAAGAAGGTCTTGCGCTCCCTCCCGAAGCTCACGGCCACCGTTGAATCCGCCGGCAAGTTCTCCGACTGCGCGATCTGCCTAACGGAGTTCGCCGCCGGGGACGAAATTCGAGTACTGCCTCAGTGCGGCCACGGCTTCCACGTGTCTTGCATCGACGCGTGGCTGAGATCGCATTCGTCGTGCCCTTCCTGCCGTCAGATTCTGATGGTTTCTAGGTGCGACAAGTGCGGTGGTATTCCCGCCACCGCCGCCGCCACTGCTACTGCCACTGCGAGCTCCAGCAGCACCGCACCTCAACCACCGGCTTCTGAGGCCAGATTCAAGGTCACTAACTGCATGGGCCTTATTAGCGATAGTGAGATTTAA 606 0.6221 MTRHLRILGETNSSASVSPDSAVVDSDFVVILAALICALICVLGLVAVARCACLRRLRLSSSSDAQPPPPLPAAANKGVKKKVLRSLPKLTATVESAGKFSDCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILMVSRCDKCGGIPATAAATATATASSSSTAPQPPASEARFKVTNCMGLISDSEI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2378 201 Pfam Ring finger domain 102 145 IPR001841 -
Dod09g2378 201 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 174 - -
Dod09g2378 201 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Dod09g2378 201 CDD RING-H2_PA-TM-RING 102 145 - -
Dod09g2378 201 PANTHER RING-H2 FINGER PROTEIN ATL8 1 174 - -
Dod09g2378 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Dod09g2378 201 SUPERFAMILY RING/U-box 96 150 - -
Dod09g2378 201 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2378 Dod-Chr9 44975137 44977479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2378 1 156 C3H Transcription Factor Family AT1G20823 65.244 2.85e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2378 - - gmx:100794614 236.113