Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2364 ATGGCTTCGAGCTGGGATGGAACTAATGACCCCGGCAGCCAGTCGGATGATAGCAGCTTTTATTTGGAGAGGATGCACATTGAGCCTATCTACGATGCTTTTGTATGTCCTCTGACGAAGCAAGTTATGCGTGATCCTGTCACTTTAGAAAATGGACAGACTTTTGAACGCGAAGCAATTGAAAAATGGTTCAAGGAATGCAGGGAAAGCGGAAGGAAACTTGTTTGCCCTTTGACTCTGCAAGAGTTAAAAAGTGCAGAATTGAACCCAAGTATGGCTTTGCGCAACACCATCGAAGAGTGGACTGCCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGCTCATTGACTATGGGAAGTCCGGAGAATGAAACTCTTCAGGCCTTAAAGTATATCCAGCACGTCTGCCGAAGAAATCGGTCGAATCAGCATATGGTCCGCAGTGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGCAGCAGCCGTAAGATACGTTGTAAAACTTTGGAAACCCTTAGAATTGTGGTAGCGGAAGACGATGAAAATAAGGAATTGTTGGCTGAAGGTGACACTGTGCGTACGGTTGTAAAATTCCTTTCTCATGAGCTTTCTAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTGTCAAAATCTGAAACCATATGTGAGAAGATCGGTTCAATCAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATTTTGACTGTTGAGAAGGCTGACAAAACATTGGAGAACCTGGAGAAATGTGAGAATAATGTGCGGCAGATGGCTGAGAATGGTAGATTGCAGCCTCTTTTGACCCAGCTTCTTGAAGGTCCACCGGAAACCAAACTGGCAATGGCCGGATACCTTGGTGAGCTGGTTTTGAACAATGATGTTAAAGTCCTTGTTGCTGGAACTGTGGGTTCATCTTTGATCAATATAATGAAAAGTGGCAATATTCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGAGCCAAGTGCAAAGGTTCTAATAGAGGCTGGAATACTTCCTCCTCTTGTGAATGACCTTTTTGCAGTGGGTCCGAATCAACTTCCGACACGATTAAAGGAGGTATCTGCTACAATTCTTGCCAATGTGGTGACCTCAGGAGAGGACTTTGACTCCATTCCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGACATAGTACATAATCTACTCCATCTTATAAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTAACTACTTCTCCAACTACAGTTCTGAGTGTTGTTTCTGCTATCAAAAGCTCTGGTGCGACTATCAGTTTGGCTCAATTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCATAAAACTTCTTCTGAATCTGTCACCCCACATGGGTCAGGAACTAGCTGATGCACTGCGTGGCTCAGTTGGACAGCTTGGTAGTTTAGTTAAAGTCATATCAGAAAATACAGGAATCACTGAAGAGCAGTCTGCAGCTGTTGGCCTCTTAGCAGATCTACCCGAGAGGGATTTGGGCCTCACAAGACAGCTGCTAGATGAAAGTGTCTTTGATCTGATCATATCTAGGGTGATTGCCATCAGGAAGGGAGAGATCAGGGCCAATCGCTTCATGACGCCATTTCTTGACGGGCTTGTGAAGATTCTTGCTAGGGTTACATATGTCTTAGCTGATGAGCCTGCTGCCAAAGCACTCTGCCGTGAACACAACCTTGCCTCATTGTTTATTGATCTTCTTCAGGCCAATGGACTTGACAATGTACAGATGGTTTCTGCTACAGCTTTGGAGAATTTATCCCAAGAGTCGAAAAATTTGACAAGATTTCCTGACCTGCCATCGCCGGGTTTCTGTGCTTCAGTCTTTAAATGCTTCTACAATCAGCCAGTCATAACTGGATTGTGCAGGATTCACCAAGGGATGTGTTCTTTAAAAGAATCATTTTGCCTTTACGAAGGGCATGCGGTCTCTAAGCTAGTAGCTCTGCTGGACCACACGAATGTGAGTGTGGTTGAGGCAGCACTTGCAGCCTTGTCTACTTTAATAGATGATGGAGTGAATATTGAGCAAGGAGTATCGGTGCTGTGTGAAGCAGAGGGAGTGAAGCCTATACTCGATGTGTTACTGGAGAAACGGACAGATAATTTGAGGAGGCGGGCAGTTTGGGCTGTGGAGAGGCTATTGCGAACCGACGACATCGCCTATGAAGTTTCTGGAGATCAAAATGTGAGCACTGCGCTGGTGGACGCTTTCCAGCACGGTGACTACCGGACTAGGCAGATTGCAGAGCGTGCCCTCAAGCATGTCGATAAGATACCAAACTTCTCGGGAATCTTTCCAAACATGGGATGA 2445 0.4528 MASSWDGTNDPGSQSDDSSFYLERMHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRKLVCPLTLQELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLTMGSPENETLQALKYIQHVCRRNRSNQHMVRSAGLIPMIVDMLKSSSRKIRCKTLETLRIVVAEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETICEKIGSINGAILILVGMTSSKSEDILTVEKADKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLAMAGYLGELVLNNDVKVLVAGTVGSSLINIMKSGNIQSREAALKALNQISSCEPSAKVLIEAGILPPLVNDLFAVGPNQLPTRLKEVSATILANVVTSGEDFDSIPFGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVSAIKSSGATISLAQFIEAPQKDLRVASIKLLLNLSPHMGQELADALRGSVGQLGSLVKVISENTGITEEQSAAVGLLADLPERDLGLTRQLLDESVFDLIISRVIAIRKGEIRANRFMTPFLDGLVKILARVTYVLADEPAAKALCREHNLASLFIDLLQANGLDNVQMVSATALENLSQESKNLTRFPDLPSPGFCASVFKCFYNQPVITGLCRIHQGMCSLKESFCLYEGHAVSKLVALLDHTNVSVVEAALAALSTLIDDGVNIEQGVSVLCEAEGVKPILDVLLEKRTDNLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2364 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Dod09g2364 814 Gene3D - 318 487 IPR011989 -
Dod09g2364 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Dod09g2364 814 SUPERFAMILY RING/U-box 24 111 - -
Dod09g2364 814 Gene3D - 118 317 IPR011989 -
Dod09g2364 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 812 - -
Dod09g2364 814 SUPERFAMILY ARM repeat 381 799 IPR016024 -
Dod09g2364 814 SMART arm_5 673 714 IPR000225 GO:0005515
Dod09g2364 814 SMART arm_5 140 180 IPR000225 GO:0005515
Dod09g2364 814 SMART arm_5 182 222 IPR000225 GO:0005515
Dod09g2364 814 SMART arm_5 267 307 IPR000225 GO:0005515
Dod09g2364 814 SMART arm_5 348 393 IPR000225 GO:0005515
Dod09g2364 814 SMART arm_5 590 632 IPR000225 GO:0005515
Dod09g2364 814 SMART arm_5 718 760 IPR000225 GO:0005515
Dod09g2364 814 Gene3D - 574 804 IPR011989 -
Dod09g2364 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 117 IPR013083 -
Dod09g2364 814 SUPERFAMILY ARM repeat 123 445 IPR016024 -
Dod09g2364 814 Coils Coil 257 277 - -
Dod09g2364 814 CDD RING-Ubox_PUB 34 81 IPR045210 -
Dod09g2364 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Dod09g2364 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2364 Dod-Chr9 44881309 44885726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2364 2 814 U-box Gene Family AT1G76390 64.663 0.0 1037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2364 - - gmx:100815928 1416.75