Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2358 ATGAAAGGTGGCAAGTCCAAGCCCGAAGCTAGGAAAGCCGATACCAAGCTTGCTGTGAACAAGAAGAGTGCTGCCACCACCAAGGGTAGCAGGAAAACCGGCAAGGGGAAGGCAGCCAAGGACCCTAACAAGCCAAAGAGGCCTCCCAGTGCCTTCTTCGTTTTCATGGAGGAATTTAGGAAACAGTTCAACAAGGAACATCCGGACAACAAGGCTGTGTCCGCTGTGGGCAAAGCTGCTGGAGCTAAATGGAAGTCAATGTCTGATGCTGAGAAAGCACCTTATGTGGCAAAGGCTGAGAAACGAAAGGCAGATTATGAGAAGAGCATGAGAGCCTATAACAAGAAACAGGCTGAAGGTCCTACTGGTGGAGATGAAGATGAGTCTGAGAAATCAATATCTGAGGTTAATGATGAGGATGATGATGAGGAAGGAAGTGGCGAGGAGGAAGATGACGAGTAG 462 0.4892 MKGGKSKPEARKADTKLAVNKKSAATTKGSRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKAEKRKADYEKSMRAYNKKQAEGPTGGDEDESEKSISEVNDEDDDEEGSGEEEDDE* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2358 153 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Dod09g2358 153 SMART hmgende2 44 115 IPR009071 -
Dod09g2358 153 Coils Coil 96 116 - -
Dod09g2358 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 152 IPR031061 -
Dod09g2358 153 MobiDBLite consensus disorder prediction 1 50 - -
Dod09g2358 153 MobiDBLite consensus disorder prediction 1 18 - -
Dod09g2358 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 152 - -
Dod09g2358 153 SUPERFAMILY HMG-box 32 119 IPR036910 -
Dod09g2358 153 MobiDBLite consensus disorder prediction 131 153 - -
Dod09g2358 153 CDD HMGB-UBF_HMG-box 45 111 - -
Dod09g2358 153 MobiDBLite consensus disorder prediction 79 153 - -
Dod09g2358 153 MobiDBLite consensus disorder prediction 94 130 - -
Dod09g2358 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Dod09g2358 153 Gene3D High mobility group box domain 28 123 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2358 Dod-Chr9 44817070 44819611 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dod09g2358 HMG_box 1.5e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2358 K25507 - gmx:100500173 226.483