Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2354 ATGGGGAACTGCTGTTTCGGAAAACCTGGTAATAACAAGATTGAGCGCGTTCACCGCACTACCTTCACCGATAAACCAAGCTCTACTTCTGCAGAAAGAAACAATGGGATCAATTTCGCGGGCGTGGAGAAGGAAAGGGAAGAAGGAAGAGGCAGGGTGAATAGTGCACAGGCTCAGCCACCGAGTAGTGGGAAAATCGTGACGCTTCCGAAAATGTTTACATTAGACGAGTTGAAAAGTGCCACGAGAAACTTTAGACCAGACACCGTCCTAGGGGAGGGTGGTTTTGGGCGTGTCTTCAAAGGATGGATTGACGAGAAAACCTTTAAGCCCTCCAAAGTTGGGGTTGGAATTCCCGTTGCTGTCAAGAAGTCTAGCCCCGACAGCCTCCAAGGACTCGAAGAATGGCAGAGTGAAGTGAAATTCTTGGGGAAGTTCTCTCATCCAAACCTAGTTAAACTACTTGGCTACTGCTGGGAGGATAATCAATTCCTGCTCGTATACGAGTACATGCCAAAGGGCAGCTTGGAAAGCCACCTCTTTAGAAGCCCAGAACCACTTCCATGGGATATAAGGCTCAAGGTTGCCATTGGAGCTGCCAGAGGTCTAGCTTTCTTGCACACATCAGAAAAGACCGTCATCTACAGAGACTTCAAGTCCTCCAACATTCTACTTGATGGGGATTACAATGCAAAACTGTCAGACTTCGGGTTAGCGAAGCTTGGCCCCGTCAACGGCAAATCTCATGTAACCACACGGGTTCTGGGCACCTATGGTTACGCCGCCCCCGAGTATATGGCCACAGGTCATCTCTACGTGAAAAGCGATGTCTATGGATTCGGTGTTGTTCTGCTGGAACTGTTAACAGGCCTAATAGCGCTGGATACAAATCGGCCACCAAGTGAGCTCAATTTATTGGACTGGACTAAGCCTTGTCTAGGTGACAAAAAGAAACTTAAAAAGAGAATGGATCCAAGGATTAGCGATCAATATTCCATGACAGCTGTATTTCAAATAGCCCAACTTATTCTTAAATGTGTAGAGGAGGACCAAAGAAAACGGCCATCGATGGAGGAGGTTTTGGAAACCTTAGAGACGGCCCAAAGCATTAAACCTAAACCCAAAGTGAAGAAAGGCAATGCAGTGCATCAAACACGTAAACGATCAGCAGAGCATTCCACACATGACCAGCATCGGTCTCCTGCACATCATTGCAATGGTCACTCCAACTCACGGACTCATTCCCCTCGGAAGTACTCCAACATGTTGCCTTGA 1275 0.4745 MGNCCFGKPGNNKIERVHRTTFTDKPSSTSAERNNGINFAGVEKEREEGRGRVNSAQAQPPSSGKIVTLPKMFTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDEKTFKPSKVGVGIPVAVKKSSPDSLQGLEEWQSEVKFLGKFSHPNLVKLLGYCWEDNQFLLVYEYMPKGSLESHLFRSPEPLPWDIRLKVAIGAARGLAFLHTSEKTVIYRDFKSSNILLDGDYNAKLSDFGLAKLGPVNGKSHVTTRVLGTYGYAAPEYMATGHLYVKSDVYGFGVVLLELLTGLIALDTNRPPSELNLLDWTKPCLGDKKKLKKRMDPRISDQYSMTAVFQIAQLILKCVEEDQRKRPSMEEVLETLETAQSIKPKPKVKKGNAVHQTRKRSAEHSTHDQHRSPAHHCNGHSNSRTHSPRKYSNMLP* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2354 424 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 47 389 - -
Dod09g2354 424 ProSiteProfiles Protein kinase domain profile. 85 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g2354 424 Gene3D Transferase(Phosphotransferase) domain 1 171 391 - -
Dod09g2354 424 MobiDBLite consensus disorder prediction 384 403 - -
Dod09g2354 424 MobiDBLite consensus disorder prediction 365 424 - -
Dod09g2354 424 Pfam Protein tyrosine and serine/threonine kinase 89 364 IPR001245 GO:0004672|GO:0006468
Dod09g2354 424 SUPERFAMILY Protein kinase-like (PK-like) 63 365 IPR011009 -
Dod09g2354 424 PANTHER OS01G0588500 PROTEIN-RELATED 47 389 - -
Dod09g2354 424 ProSitePatterns Protein kinases ATP-binding region signature. 91 124 IPR017441 GO:0005524
Dod09g2354 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Dod09g2354 424 MobiDBLite consensus disorder prediction 404 424 - -
Dod09g2354 424 MobiDBLite consensus disorder prediction 22 63 - -
Dod09g2354 424 Gene3D Phosphorylase Kinase; domain 1 70 170 - -
Dod09g2354 424 CDD STKc_IRAK 91 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2354 Dod-Chr9 44775837 44779907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2354 71 364 Glycoside Hydrolase AT3G07070 49.329 4.05e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dod09g2354 PK_Tyr_Ser-Thr 6.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2354 - - aprc:113865973 589.726