Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2352 ATGGGAGATGGTGCAGTGTCATCATCAGGTACCATGCTGGAAGCTCCACCTGAGGGAACACCAATGGACTTTGACTACATGAATGACCTTTTTGGAGAGGGTTGCTGGTTGGCAGCCTCTGCTGATGGATCTGATTTTTTGATGCAAAGTCCTTCCTTTTCAAATCCCCTCTTTGACCCTTCATTCCCTTGGCCTGCCTTGGAGACCAGTGACCCTCCTCACAATGGGGATCAGCTTGAATCCCAGGAAGCTGCTTTTCGCACCCAACCAGTTAGCCAGGACATTGTCAGTGCTGCTGGTAGTTGTAGCCAGAAGCAGTATCTGTCAGAAATTCAATCGGTCGAAAGTTCCTCTGAAATGGTCAGAAGGTGGTGGATTGCACCCACCGCTAATCCAGGGCCTGGATCTTCTGTAGTGGAGAAGTTATTGAGGGCCGTCATGTGTATCAAAGATGTGAGCAGAAACAAAGATATGCTTATACAAATTTGGGTGCCAGTTAATAGAGGGGGCAGGCAGATTCTTACAACTAATGGTCTTCCTTATTCACTTGAAACCGGGTCTGTAAACCTTGCAAAATACCGAGAAATCTCCGTGGCATATCATTTTTCTGCTGAGGAGGACTCAAAGGGGTTGGTGGCGGGGTTGCCTGGTAGAGTCTATAGGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTCAGAAGTCATGAGTATCCGCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGATCATTAGCACTTCCAATCTTTGAGCAAGGTAGCAGGAATTGCTTGGGTGTTGTAGAGGTTGTGACAACTACTCAGCAGATCAACTACCGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCGAAACTTCCACGTATTCAGATTGTGAAGGCATGTGACAAGTCCTATGAAGCTGCATTGCCAGAGATTCAAGAGGTGTTGAGATCTGCTTGTGAAATGCACAAATTACCATTAGCTCAAACTTGGGTCCCATGCATCCAACAAGGCAAAGAGGGGTGCCGGCATTCTGAAGATAATTATTTGCACTGCATATCTCCTGTGGAGCATGCTTGCTATGTTGGTGATCCATCAATCCGGATTTTTCATGAGGCTTGTTCTGAGCATCACTTATTAAAAGGTCAAGGTGTTGCTGGGGGAGCATTTATGACAAATCAACCATGCTTCTCAACTGACATAACTTCCTTAAGCAAAACAGACTATCCACTTTCTCATCATGCGAGGATGTTTGGATTGCGGGCTGCCGTTGCAATACGCCTGCGAAGCATCTATAGTACTAGAGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTAAATTGCAATGACAGTGAAGAACAGAGAAAGATGCTTACTTCATTGTCCTTGATTATACAAAGGGTTTGCCACAGCTTGCGGGTTATATCAGATAAGGAACTGGAGGAGGAAAGTAACTTATCAGCTGATCAAGTGACAGCCCTTCCAGACAGTAGATTTGCTAGAACTGCAGACTGGACTGAACCACAACAGAAGGGGATGGTTGCCTCATTGGGGACTGAAGAAAAATCAAGTGAAACAATGCGTAGAAATTTCTCCGACCTAAGGCAACAACAAGATTATGCTATTTTAAAAGGAAACTTTGACTCTGTTGGGGAGTGCTCTACTTTGGGTGAGGGGAACTTATCAAGTGTGGGAATAAGTAGGACAGGAGACAAAAAACGGGCCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCAGCAATATTTCGCTGGAAGCCTAAAAGATGCCGCAAAGAACATTGGTGTTTGTACTACAACACTGAAAAGGATCTGCCGGCAACATGGGATAAAGCGCTGGCCTTCTCGGAAGATCAAGAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTCCAAGGTACCTCTGGTGCATTTCAGATAGATTCCTTCTATTCAAAATTCCCGGACCTAGCTTCTCCAAACTTATCAGGAACAAGCCTGTTCTCAACTCTGAAGCAAAGTGATAATCCAAACTCATTAAGCACACAACCGGATCCTGGCTCCTTGAGCCCAGAAGGCACATCCAAATCACCCTCTTCTTCTTGCAGTCAGAGTTCCATTTCAAGCCATCCATGTTCCAGCACGGCAGAGCAGCAGCATCACACAAGTAATGTCGCTGGCAGCAAAGATCACATTGTTGGAGAAAATTCCGGTGATTGCGTGTTGAAGAGGATCAGAAGTGAAGCAGAACTAAAATGCCTGAGTGAAGATAGAGCAAAAGTTTTGCCAAGATCACAAAGCCAGGAAGCACTTGGCCAACACCTTAAAACTCAGTATCATAGACCCTTGTCAAAAACCAATTGCCAAGGACCTCAAAAGGAGAATGCTTACAGAGTAAAAGTCACATATGGAGATGAGAAAGCAAGGTTTAGGATGCCAACAAAGAATTGGGGTTATGAAGATCTTTTGAGGGAAGTTGGTAGGAGATTTAACATAAGTGACATGAGCAAATTCGATATCAAATATTTGGACGACGACTTCGAGTGGGTGTTACTAACCTGTGATGCTGATTTAGTGGAGTGCATTGATGTTTGTCAATCTTCTGAGAGCAGCACCATCAAGCTTTGTCTGCGAGTTTCTAACCATTGTATGAGAAGTTCTTTGGAATTTAGATAG 2718 0.4463 MGDGAVSSSGTMLEAPPEGTPMDFDYMNDLFGEGCWLAASADGSDFLMQSPSFSNPLFDPSFPWPALETSDPPHNGDQLESQEAAFRTQPVSQDIVSAAGSCSQKQYLSEIQSVESSSEMVRRWWIAPTANPGPGSSVVEKLLRAVMCIKDVSRNKDMLIQIWVPVNRGGRQILTTNGLPYSLETGSVNLAKYREISVAYHFSAEEDSKGLVAGLPGRVYREKVPEWTPDVRFFRSHEYPRVDHAQEYDVRGSLALPIFEQGSRNCLGVVEVVTTTQQINYRPELESVCKALEAVDLRSSKLPRIQIVKACDKSYEAALPEIQEVLRSACEMHKLPLAQTWVPCIQQGKEGCRHSEDNYLHCISPVEHACYVGDPSIRIFHEACSEHHLLKGQGVAGGAFMTNQPCFSTDITSLSKTDYPLSHHARMFGLRAAVAIRLRSIYSTRDDFVLEFFLPVNCNDSEEQRKMLTSLSLIIQRVCHSLRVISDKELEEESNLSADQVTALPDSRFARTADWTEPQQKGMVASLGTEEKSSETMRRNFSDLRQQQDYAILKGNFDSVGECSTLGEGNLSSVGISRTGDKKRAKAEKTITLQVLQQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGTSGAFQIDSFYSKFPDLASPNLSGTSLFSTLKQSDNPNSLSTQPDPGSLSPEGTSKSPSSSCSQSSISSHPCSSTAEQQHHTSNVAGSKDHIVGENSGDCVLKRIRSEAELKCLSEDRAKVLPRSQSQEALGQHLKTQYHRPLSKTNCQGPQKENAYRVKVTYGDEKARFRMPTKNWGYEDLLREVGRRFNISDMSKFDIKYLDDDFEWVLLTCDADLVECIDVCQSSESSTIKLCLRVSNHCMRSSLEFR* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2352 905 MobiDBLite consensus disorder prediction 682 744 - -
Dod09g2352 905 PANTHER PROTEIN NLP8 20 901 IPR045012 GO:0003700
Dod09g2352 905 MobiDBLite consensus disorder prediction 1 20 - -
Dod09g2352 905 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Dod09g2352 905 Gene3D - 806 892 - -
Dod09g2352 905 ProSiteProfiles PB1 domain profile. 810 894 IPR000270 GO:0005515
Dod09g2352 905 SMART PB1_new 810 894 IPR000270 GO:0005515
Dod09g2352 905 PANTHER PROTEIN NLP4 20 901 - -
Dod09g2352 905 CDD PB1_NLP 812 892 IPR034891 -
Dod09g2352 905 Pfam RWP-RK domain 590 638 IPR003035 -
Dod09g2352 905 Pfam PB1 domain 811 892 IPR000270 GO:0005515
Dod09g2352 905 MobiDBLite consensus disorder prediction 682 745 - -
Dod09g2352 905 SUPERFAMILY CAD & PB1 domains 804 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2352 Dod-Chr9 44732942 44737518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2352 18 896 NLP Transcription Factor Family AT1G20640 48.721 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dod09g2352 PB1 4e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2352 - - gmx:100790922 1291.95