Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2323 ATGTCTTCGGCGGCGAGTAGCACTGCCAGTGAGGAGCAGGGAAAACATTATCCTCCGCCACTTGCCTCTCACGACGACGTTGTCAAGGACCCTGCTATTTTCTGGGACAGTCTCAGGCGCTTTCACTTCGTTATGGGTACCAAATTCATGATTCCGGTGATTGGAGGGAAGGAGCTGGATTTGCGCGTTCTTTACGTGGAGGTTACGAGGAGAAGTGGCTATGAGAAGGTGGTTGCAGAGAAGAAATGGAGGGAAGTGGGGAGCGTGTTCAGGTTCTCGGCGACCACTACAAGCGCTTCTTTTGTTCTGAGGAAGCACTACCGCAGCCTTCTCTACCATTACGAACAAGTTCACTTCTTTAAAGTTCGGGGCCCTCTCCACACTCCATCAGCAGACGCATTTTCTGGCAGCAACCAGTCTTGGAGACCTGAACTAGCTATTGTGGAATATTCTCCTAAGCCAACGAACCATAATCCAGTGTCCCAAGCTGAAGGTACTTCATGTCTTTCAGGGAGTGGAACCATCGAGGGGAAATTTGAGTGCGGTTATATAGTATCAGTGAAACTGGGTTCGGAGGTTTTGAGAGGAGTGCTTTACCATCCAGAGCAATCGGCTCCTAGCCCATTGATTCCGCGGTATGACAATGCCATTGTGCCATACAATCGCAAACCTCGCCATTCTGGTCGTCGTAGGAGAAGAAACAAAAGAAAGTGGGACCCCAACTACCCAAAGCCAAATAGGAGTGGCTATAATTTCTTCTTTGCTGAAAAGCATTACAAGCTCAAGACCCTCTATCCAAACAGAGAAAGGGAATTTACCAAAATGATTGGCCAGTCATGGAATAGTCTTAGCCAAGAGGAAAGAATGGTTTACCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGGGAGTTGAGGGAGTACAAGGAAAAAATGAAGCTTATGCAGAAGGCAGAAGTTGGGTCGTCCATAAATCTCACCGGTGGCCTTTATGGCAGCGAAAGAATGGCTTAG 1017 0.4779 MSSAASSTASEEQGKHYPPPLASHDDVVKDPAIFWDSLRRFHFVMGTKFMIPVIGGKELDLRVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSATTTSASFVLRKHYRSLLYHYEQVHFFKVRGPLHTPSADAFSGSNQSWRPELAIVEYSPKPTNHNPVSQAEGTSCLSGSGTIEGKFECGYIVSVKLGSEVLRGVLYHPEQSAPSPLIPRYDNAIVPYNRKPRHSGRRRRRNKRKWDPNYPKPNRSGYNFFFAEKHYKLKTLYPNREREFTKMIGQSWNSLSQEERMVYQNIGLRDKERYKRELREYKEKMKLMQKAEVGSSINLTGGLYGSERMA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2323 338 MobiDBLite consensus disorder prediction 223 238 - -
Dod09g2323 338 Coils Coil 299 319 - -
Dod09g2323 338 Pfam ARID/BRIGHT DNA binding domain 34 115 IPR001606 GO:0003677
Dod09g2323 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 321 - -
Dod09g2323 338 CDD HMGB-UBF_HMG-box 243 307 - -
Dod09g2323 338 SMART ARID_2 25 115 - -
Dod09g2323 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 321 - -
Dod09g2323 338 SMART hmgende2 242 311 IPR009071 -
Dod09g2323 338 MobiDBLite consensus disorder prediction 1 23 - -
Dod09g2323 338 MobiDBLite consensus disorder prediction 216 243 - -
Dod09g2323 338 Pfam HMG (high mobility group) box 243 310 IPR009071 -
Dod09g2323 338 SMART bright_3 29 120 IPR001606 GO:0003677
Dod09g2323 338 CDD ARID_HMGB9-like 30 115 IPR045303 GO:0003677
Dod09g2323 338 Gene3D - 21 125 IPR036431 GO:0003677
Dod09g2323 338 SUPERFAMILY ARID-like 23 123 IPR036431 GO:0003677
Dod09g2323 338 Gene3D High mobility group box domain 227 326 IPR036910 -
Dod09g2323 338 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 310 IPR009071 -
Dod09g2323 338 SUPERFAMILY HMG-box 240 314 IPR036910 -
Dod09g2323 338 ProSiteProfiles ARID domain profile. 28 119 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2323 Dod-Chr9 44479774 44483115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2323 15 315 ARID Transcription Factor Family AT1G76110 65.902 5.27e-137 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dod09g2323 ARID 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2323 - - gmx:100784746 518.85