Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2316 ATGGATGAACCAGATCCTGATTATGAGCTATTTTGTCGACTACGGTGTTCCCCAAATGAACATGATATTTCGGATGAAAGGCCTTCCAGTGCAGTAAGTCTAGGGCCAAATTCACAGACAAGTGTAACATCAAGCAACATCGAATTAAAAAAAATTCTGAGCCATTATGAAGCTACCAGAAACCAAGTGACATTTCCTGTAAACTTCTCAAGGGAGTTGTTAAAATATGGATCAGATGGGGTGTGGAACATTTATGTTCATAATGGTGACCATATGCAAGAATTCACTTGCAAGTTATTAAAGTCAAAAGAAAATCAAGTAAAATTTGGACAAGGATGGAAGGATCTATGTAATGCATATTCCCTTAAAAGAAATGACGAGTGCACGTTCAAGATTAATGATGGTCCAAATCAGGTCATGGAAATGTCCATTAATGAATTCGAAATTGTATTCACCTAA 459 0.366 MDEPDPDYELFCRLRCSPNEHDISDERPSSAVSLGPNSQTSVTSSNIELKKILSHYEATRNQVTFPVNFSRELLKYGSDGVWNIYVHNGDHMQEFTCKLLKSKENQVKFGQGWKDLCNAYSLKRNDECTFKINDGPNQVMEMSINEFEIVFT* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2316 152 Pfam B3 DNA binding domain 50 134 IPR003340 GO:0003677
Dod09g2316 152 Gene3D - 29 148 IPR015300 -
Dod09g2316 152 SMART B3_2 49 148 IPR003340 GO:0003677
Dod09g2316 152 MobiDBLite consensus disorder prediction 21 41 - -
Dod09g2316 152 SUPERFAMILY DNA-binding pseudobarrel domain 45 133 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2316 Dod-Chr9 44418162 44419728 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod09g2316 B3 3.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2316 - K07568 vun:114180824 41.2022