Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2306 ATGGCTAAACCCTTCTTTGTCTTGCCAAGCTTCATCGTATTATGCTGTAACTGTTTCACAATTAATACATGCGCCTTCTCACCTTCTGGATGGAGCAGAGCCCACGCCACTTTTTATGGAGGTAGCGATGCCTCGGGGACAACGGGGTATGGGACAAGAACTGCGGCATTAAGTACTGCCTTATTTAACGACGAAGCTTCGTGTGGGGAGTGCTACAAAATCATATGTGATTATCAAGCGGACCGCAAATGGTGCGTGAAAGGAACATCAGTAACCATAACCGCCACGAACTTTTGCCCTCCCAATTATGCTCTTCCCAACAACAATGGAGGCTGGTGCAATTCACCTTTCAAGCATTTCGACATGGCTCAACCCGCATGGGAAAAGATTGGCATTTACAGAGGAGGGATCGTGCCCGTGTTGTTCCAAAGGGTTCCATGCAAAAAAAAGCACGGAGGGGTGAGGTTCACTGTGAATGGGAGAGACTACTTTGAGCTTGTATTGATAAGCAATTTTGCAGGGGCTGGATCCATCCAATCTGTGTCCATCAAAGGCTCCAAAAACGGGTGGATGGCTATGTCAAGAAACTGGGAGCTAATTGGCAATCCAATGCGTATTTGA 621 0.4718 MAKPFFVLPSFIVLCCNCFTINTCAFSPSGWSRAHATFYGGSDASGTTGYGTRTAALSTALFNDEASCGECYKIICDYQADRKWCVKGTSVTITATNFCPPNYALPNNNGGWCNSPFKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKKHGGVRFTVNGRDYFELVLISNFAGAGSIQSVSIKGSKNGWMAMSRNWELIGNPMRI* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2306 206 Pfam Expansin C-terminal domain 154 197 IPR007117 -
Dod09g2306 206 SMART dpbb_1 54 142 IPR007112 -
Dod09g2306 206 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 152 IPR007112 -
Dod09g2306 206 PRINTS Expansin signature 49 63 IPR002963 GO:0009664
Dod09g2306 206 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Dod09g2306 206 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Dod09g2306 206 PRINTS Expansin signature 78 89 IPR002963 GO:0009664
Dod09g2306 206 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Dod09g2306 206 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Dod09g2306 206 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Dod09g2306 206 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Dod09g2306 206 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Dod09g2306 206 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Dod09g2306 206 SUPERFAMILY Barwin-like endoglucanases 30 171 IPR036908 -
Dod09g2306 206 Pfam Lytic transglycolase 54 141 IPR009009 -
Dod09g2306 206 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 206 IPR007117 -
Dod09g2306 206 Gene3D - 17 148 IPR036908 -
Dod09g2306 206 PANTHER EXPANSIN 10 198 - -
Dod09g2306 206 PANTHER EXPANSIN-A15 10 198 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2306 Dod-Chr9 44289364 44290218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2306 54 197 Expansin Gene Family AT1G20190 81.944 5.12e-86 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2306 - - gmx:100792023 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2304 08 51085631 51088205 Dod09g2306 09 44289364 44290218 PCT