Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2273 ATGTCGACTTCGGGCGAGGATCAAACCCGCCCTCCTCAATTCAAATTCCACCTATTGCGTTCCCATTCCCATCCCCATCCCCACTTTCCTCCTCCCTCCAATTCTTCTTTTCCTAACCTACCCGTCACCCTACCTATGCAGTTGGGTCAAAGATACGAAATCAATAGTTTAGAGTCTGAGACAAGTAACGTTGAAGTAGCTCCTAGTCTGACTCTGAGCAATTCATCAGCTAATCTTCCTACACTTCAAACTGAGCCTGCCGTAAGAGGAAAGCTTCAAAAATCTCCTAATTTGACTACGGTTAATAACTGTCGATATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTTAACTTGATTGAGGAGGCGAAGGATGGTACCCTGGATCTAAATAAAACTGCTGAGATCTTGGAGGTTCAAAAAAGGAGAATTTATGATATTACAAATGTCCTTGAAGGAATAGGATTAATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGCGATGGACATGGCCCACGAGAACTGGATGAACAAGTTACTAGACTAAAGGCTGAAGTTAAAAGTTTATATGCCGAGGAATCTGTACTTGAGGATTGTATAAGGAAAAAGCAAGAGCTTCTAAGAAATCTGGAGGAAAGTGAAAACTCTCGAAAGTACCTTTTCCTGACCAAGGAAGACATTCTTAGCATTCCATGCTTCCAGAGCCAAGAACTCATTGCAATCAAGGCTCCAAAAGCCAGTTTCATTGAGGTCCCGGATCCTGATGAGGAGTTAGGTTTCCGGCAAAGGCAGTACAAAATGACTATTAGAAGTGCCACTGGACCAATATATTTGTACATCTTGAGCAAGCATGGCCACAAGTTTGAGGATGATAGTTTCAAGCAGGTTAAATTAATAGATCCATCATGGAATAGAGACCACAGCAGAATAAGGGGTGTGGGAATATTAGAAAGTCAAAGTGATCTGAAAAATCCTTCCCAGAGTTTCAGATTGTTGGGCTCAGAGGCATTTGGAATTCAAGAAATTACTCCAACAGATTTTGAAATGGATTATGACTATTGGTTTCAATCAGATCGTGGAGTTACCCTTACAGAATTGTGGGCAAATGAGCACATGGTACATATGGATGAGCTACTTCAAGACAATTAA 1161 0.4117 MSTSGEDQTRPPQFKFHLLRSHSHPHPHFPPPSNSSFPNLPVTLPMQLGQRYEINSLESETSNVEVAPSLTLSNSSANLPTLQTEPAVRGKLQKSPNLTTVNNCRYDSSLGLLTKKFVNLIEEAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGHGPRELDEQVTRLKAEVKSLYAEESVLEDCIRKKQELLRNLEESENSRKYLFLTKEDILSIPCFQSQELIAIKAPKASFIEVPDPDEELGFRQRQYKMTIRSATGPIYLYILSKHGHKFEDDSFKQVKLIDPSWNRDHSRIRGVGILESQSDLKNPSQSFRLLGSEAFGIQEITPTDFEMDYDYWFQSDRGVTLTELWANEHMVHMDELLQDN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2273 386 Pfam E2F/DP family winged-helix DNA-binding domain 107 170 IPR003316 GO:0005667|GO:0006355
Dod09g2273 386 PANTHER TRANSCRIPTION FACTOR E2FC 94 374 - -
Dod09g2273 386 Pfam E2F transcription factor CC-MB domain 186 285 IPR032198 GO:0046983
Dod09g2273 386 Coils Coil 200 220 - -
Dod09g2273 386 SUPERFAMILY E2F-DP heterodimerization region 181 287 IPR037241 -
Dod09g2273 386 CDD E2F_DD 181 288 IPR032198 GO:0046983
Dod09g2273 386 PANTHER TRANSCRIPTION FACTOR E2F 94 374 IPR015633 GO:0000978|GO:0006357
Dod09g2273 386 SUPERFAMILY "Winged helix" DNA-binding domain 105 168 IPR036390 -
Dod09g2273 386 Gene3D - 100 172 IPR036388 -
Dod09g2273 386 Gene3D - 177 288 - -
Dod09g2273 386 SMART E2F_TDP_2 105 170 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2273 Dod-Chr9 44045033 44048906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2273 103 373 E2F-DP Transcription Factor Family AT1G47870 54.982 9.97e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dod09g2273 E2F_CC-MB 6.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2273 K06620 - gmx:100797301 477.248