Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2245 ATGGCTCGAGGGAAGATCCAGATCAAGAGGATAGAGAACACGACCAACCGGCAGGTGACCTACTCAAAACGACGCAACGGCCTTTTCAAGAAGGCCAACGAGCTCAGCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAGCTCCACGAGTACATTAGCCCCTCCACGTCAACAAAGCAGTTCTTCGATCAGTACCAGATGACCGTAGGAGTTGATCTGTGGAACTCTCACTATGAGAATATGCAAGAAAACTTGAGGAAGCTGAAAGAGGTTAACAGGAATCTTCGCAACGAGATTAGGCAGAGGATGGGGGATTGTCTAAACGATCTGAGCATAGAAGAACTCAAGCTCCTTGAGGAAGAAATGGACAAGGCTGCCAAGGTTATTCGCGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTCAATAACGAGAAAGAAGTGCATAGCAGGCTCCTTCGTGATTTAGATGCTAGAGCGGAAGATCCGCGTTATGGATTGGTGGACAATGGAGGGGAGTATGAATCTGTCATCGGATTCTCAAATTTAGGTCCTCGGATGTTTGCCTTGAGCCTGCAGCCTAGCCATCCTTATGACCATAGCGGAGCAGGGTCTGATCTTACCACTTACCCCTTACTTTTCTAG 681 0.4714 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELSVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTVGVDLWNSHYENMQENLRKLKEVNRNLRNEIRQRMGDCLNDLSIEELKLLEEEMDKAAKVIRERKYKVITNQIDTQRKKFNNEKEVHSRLLRDLDARAEDPRYGLVDNGGEYESVIGFSNLGPRMFALSLQPSHPYDHSGAGSDLTTYPLLF* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2245 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod09g2245 226 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Dod09g2245 226 Coils Coil 114 134 - -
Dod09g2245 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod09g2245 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Dod09g2245 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod09g2245 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Dod09g2245 226 PANTHER APETALA3 1 223 - -
Dod09g2245 226 Coils Coil 77 111 - -
Dod09g2245 226 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod09g2245 226 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Dod09g2245 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod09g2245 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod09g2245 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod09g2245 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod09g2245 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2245 Dod-Chr9 43749158 43751851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2245 1 225 MADS-box Gene Family AT3G54340 57.576 2.23e-96 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod09g2245 K-box 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2245 K09264 - gmx:547720 419.468