Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2227 ATGCATTATCTGCGTCAAAAGTCAAAACGTAGAGGTGCTGCTGCTCGTATAAAAGGGGACGCAATGATCCATTGGTTCATTCGTTGTGGGTTGCCATTAGAAGACATGAAGCGTACACGTCGACGCTGTGGGATTAAGAAGGGAGGGAGAGAGAGGGGTTACACCAAGTTACAGGTCCACCAACTGGTGGTTAGGGATTGGTTGGTGCCGGTGTTCCAATCCAATGATAAGGGGAAGGTGGGTCTTTGTTTGTTTGAACTGAACATTGAAGTGTATCTCTTGGGATTGCCATTTGTCTGGGCTTGCTCAAACCATGGATTATTGTCTGCCATTCTTTGCTGCTCTCTTTCCTTCTCACTAGACTCCCTCCATTCCCCCTTTTCGGTTTTTAGTCCCCTCCACCTCTGCCTCTCACTTTCAGGATCCTATGCGGAGATGTTGTCTGGGAGTCCTTTATTGCCTCACAACTACAGTGGATCTGTTGGTGGACCAACTATGGGTGATCCAGCGTGCAACTCTTTTGCTGAACATTCCCATGTTGTTCCAAGGACCCAAATGGGAATTGTAGATAGTGAGCATAATGCACAATACCAGGGCTTATCTCTTAGTCTGGGGACACTGATGCCTCCTACTGCATCTGTCCCTCCATTTGAACACCAGTATCCTGGCACTGGTCTCTCATCACTAATGACTGAGGCCAACCTACATAAGGAATTGAGAAGTGCTGAATGCATGGCATCTGTGTCTTCTGGAGGCTTTCATGACAGTGTCAAAAGGCCGGGTTTGTACAATCCGAACCCCTCAGCTTGCCTCAAAGATGTCCACTCTGATCCATGCCTGCAGGGATCACAAGGTTTTTCAAACACCATCCTGAACTCACAGTTTCTTAAGGCAGCACAGGAGTTACTTGATGAAGTAGTTAATGTCCGAAAGGCTTTGAAGCAACCTGGAATGGAAAAACAAGGAAACTTCCGTGAAACTGGATTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGTCAATCTGTGCAAGTTTCTTCAGGCCCCAATGGTTCTAATGCCAACCCTCCTCCTGAACTGTCACCTGGAGAACGGCAGAATTTGTTGGAAAAGAAGACAAAGCTTTTGGCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTCGACATGGTTGCTGGATGTGGAGCAGCTGAACCATATACCTCACTTGCACTGCGTACTATTTCTCGCCACTTTCGCTGTCTGCGTGATGCTGTCAGTGGCCAAATTCAAGTGACTCAAAGGAGTCTTGGGGAACAAGAGGGAATACCCCGTCTCCGTTATGTTGATCAGCAACTTAGACAGCAAAAGGCCCTTCAGCAGCTTGGTGTAATGCGCCAAGCTTGGAGGCCTCAGAGGGGTCTTCCTGAAAGCTCTGTTTCAATACTACGTGCTTGGCTCTTTGAGCATTTTCTTCATCCTTACCCCAAGGATTCAGAGAAAATTATGCTTGCAAGACAAACAGGGTTGAGCAGAAACCAGGTGGCAAATTGGTTCATCAATGCGAGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAGGAAGAGTTTGGTGATTCCGAGATGAGCTGCAATCTTCCATCTGAGAATATGCTCAAAGGCAAAAGAGATGATGCTCAAGCCTCGGATGACAAAGGGGAAGAGTCACAGGACAATTTAATAACTGTTGATAGTGTCCAACAAGCGCAACTTCATGGATTGAAGCCAGAACATGCATCTTCCACTGCAGAATTCGATAGAGGGATACAAAACAGTGGTCATGGAGAAAATAGGATGGATTCTGGAGCCAGGAAAGTGCAGGGCAGCCAAAGGTTTACCATGAACAACAATAGTAATAATAGTCTTTATTCTTGTGCACCTATCCCGACAAATCAGAATGGTGATGGCAGCAGCATAATTGGTTCTGCTACTACTCCTGCTACATACGATTTATCAGAGTTGGGTAACTTTACAATGGGTGGCCACGTTTCTCTTGCATTGGAGTTGAGGAACTGTGAAAGTGATGGATTTGCTATCTCCGATGATGCCATCCATAAAAGACGTAATCAGGCATTGGTTTCTTCCCCAGAGGCTGATTTGCTAGATTATCACTTCACAGATTCAGGAAAGCAACAACACAGGTTTAGCAACCCTCATCTGTTGCATGAGTTTGTCGTCTGA 2244 0.4594 MHYLRQKSKRRGAAARIKGDAMIHWFIRCGLPLEDMKRTRRRCGIKKGGRERGYTKLQVHQLVVRDWLVPVFQSNDKGKVGLCLFELNIEVYLLGLPFVWACSNHGLLSAILCCSLSFSLDSLHSPFSVFSPLHLCLSLSGSYAEMLSGSPLLPHNYSGSVGGPTMGDPACNSFAEHSHVVPRTQMGIVDSEHNAQYQGLSLSLGTLMPPTASVPPFEHQYPGTGLSSLMTEANLHKELRSAECMASVSSGGFHDSVKRPGLYNPNPSACLKDVHSDPCLQGSQGFSNTILNSQFLKAAQELLDEVVNVRKALKQPGMEKQGNFRETGLDGSKDSDGKSTSQSVQVSSGPNGSNANPPPELSPGERQNLLEKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTSLALRTISRHFRCLRDAVSGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLSRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSCNLPSENMLKGKRDDAQASDDKGEESQDNLITVDSVQQAQLHGLKPEHASSTAEFDRGIQNSGHGENRMDSGARKVQGSQRFTMNNNSNNSLYSCAPIPTNQNGDGSSIIGSATTPATYDLSELGNFTMGGHVSLALELRNCESDGFAISDDAIHKRRNQALVSSPEADLLDYHFTDSGKQQHRFSNPHLLHEFVV* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2227 747 Pfam Homeobox KN domain 492 531 IPR008422 GO:0003677|GO:0006355
Dod09g2227 747 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 182 704 - -
Dod09g2227 747 Pfam Associated with HOX 290 433 IPR006563 -
Dod09g2227 747 SUPERFAMILY Homeodomain-like 476 542 IPR009057 -
Dod09g2227 747 MobiDBLite consensus disorder prediction 317 365 - -
Dod09g2227 747 ProSiteProfiles 'Homeobox' domain profile. 472 535 IPR001356 GO:0003677
Dod09g2227 747 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 182 704 - -
Dod09g2227 747 Coils Coil 366 386 - -
Dod09g2227 747 SMART HOX_1 475 539 IPR001356 GO:0003677
Dod09g2227 747 MobiDBLite consensus disorder prediction 559 579 - -
Dod09g2227 747 Gene3D - 472 549 - -
Dod09g2227 747 MobiDBLite consensus disorder prediction 547 580 - -
Dod09g2227 747 MobiDBLite consensus disorder prediction 334 361 - -
Dod09g2227 747 CDD homeodomain 475 536 IPR001356 GO:0003677
Dod09g2227 747 SMART prehox3 284 434 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2227 Dod-Chr9 43544792 43550474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2227 285 558 Homeobox Transcription Factor Family AT2G16400 63.158 2.58e-111 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dod09g2227 POX 8e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2227 - - gmx:100791641 830.476