Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2179 ATGACGGAGCCTCTGCATAATCCTCCTTCACCAATGGCACTTTCCGGCGAAGCCACCACCTTCTCTTCTTCTGCCTTAGACTTAGAAACCGCACCTCAACCCCCACCCCACAAAAAGAAGCGAAGCCTTCCCGGAATGCCAGATCCGGATGCTGAGGTGGTTGCTTTATCGCCGAAGACACTGTTGGCGACGAATCGTTTCGTGTGCGAGATCTGCAACAAAGGGTTCCAGAGGGACCAGAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCATGGAAGCTCCGACAGCGATCCACCGCGGAGGTTCGGAAGAAGGTGTACGTGTGCCCCGAACCTACCTGCGTGCACCACAACCCAGCCAGGGCGCTTGGGGACCTCACCGGGATCAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGCTCAAATGCGAGCGTTGCTCCAAGAAATACGCCGTGCGTTCCGATTGGAAGGCCCACATGAAGACTTGCGGCACCAGAGAGTACAGATGCGGTTGCGGCACCTTGTTCTCTAGGAGGGATAGCTTTGTAACGCACAGAGCTTTTTGCGATGCCTTAGCGGAAGAGAGTGCCAGGAACCAAACCCTAGGCACTGGCAAGGATGGTGTGGCGGCGGCGGCGGCTTCTTCCTCTTCGCCGCCGCCACAGCCGCTGACTCCGTCGACGACGGTGGTGTCTCCGACTCTATCCATTCAGAGCTCAGAAATAATTGCGGAGAACGCAACGAAGCTGTCGCCGCCGTCTTCGAACGCAACGTGTGTTGTGAACGCTGTAACAACCGGCACACCTTCCAGTTACACTACTTGTGGCAATGTTTTTCCGAGTGTGTTGGCATCCTCAGCCACCGCAGCACCACCTTCCCAAGCACCGTCAACATCCTCATTCCCCAACCTCACCGCTGCTATTGCTGCCAGTAGAACCCACATCCCTTACCCTCTCCACACCACTCTATCTCTCCACCAACGACCCTTCCTCCCTACAAGACCATTGCCACCACTACGCTGCATGCCCACAAGTACCAGCATTGTCTGCCACTGCATTGCTCCAGAAGGCAGCTCAAATGGGTGCCGCTGCATCCAATGCATCATCATTGCTCCGAGGTCTAGGCTTGTCATCATCCTCCACGGGACAAGATGA 1161 0.5616 MTEPLHNPPSPMALSGEATTFSSSALDLETAPQPPPHKKKRSLPGMPDPDAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTAEVRKKVYVCPEPTCVHHNPARALGDLTGIKKHFCRKHGEKKLKCERCSKKYAVRSDWKAHMKTCGTREYRCGCGTLFSRRDSFVTHRAFCDALAEESARNQTLGTGKDGVAAAAASSSSPPPQPLTPSTTVVSPTLSIQSSEIIAENATKLSPPSSNATCVVNAVTTGTPSSYTTCGNVFPSVLASSATAAPPSQAPSTSSFPNLTAAIAASRTHIPYPLHTTLSLHQRPFLPTRPLPPLRCMPTSTSIVCHCIAPEGSSNGCRCIQCIIIAPRSRLVIILHGTR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2179 386 Gene3D Classic Zinc Finger 121 201 - -
Dod09g2179 386 Gene3D Classic Zinc Finger 47 113 - -
Dod09g2179 386 MobiDBLite consensus disorder prediction 202 232 - -
Dod09g2179 386 SMART c2h2final6 108 138 IPR013087 -
Dod09g2179 386 SMART c2h2final6 143 163 IPR013087 -
Dod09g2179 386 SMART c2h2final6 67 89 IPR013087 -
Dod09g2179 386 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Dod09g2179 386 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Dod09g2179 386 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 16 317 - -
Dod09g2179 386 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 317 - -
Dod09g2179 386 MobiDBLite consensus disorder prediction 13 29 - -
Dod09g2179 386 Pfam Zinc-finger of C2H2 type 67 89 - -
Dod09g2179 386 MobiDBLite consensus disorder prediction 1 50 - -
Dod09g2179 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2179 Dod-Chr9 43167898 43171638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2179 38 203 IDZ Gene Family AT5G66730 87.952 5.38e-112 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod09g2179 zf-met 0.0026 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2179 K25869 - gmx:100800089 400.593