Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2168 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCTCCCCCAAGCCCTTCCTGCTCCAACAACAACAATAACAATGATGCTGGCAATTTTGAATGCAACATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTTTGTGTGGTCACCTCTTCTGCTGGCCTTGTCTCTACAAATGGCTTCATTTCCACTCGCAGTCGCGAGAATGCCCCGTGTGCAAGGCCGTCGTTGAGGAGGACAAGCTGGTTCCGTTGTACGGGAGAGGAAAGACATCAACTGACCCAAGATCAAAATCAATTCCAGGTGTTAATATCCCACATCGCCCTGCTGGTCAGAGACCTGAAACTGCTCCTCCTCCTCCACCTCCTGAACCAAATCATCATTTTCATCAACATGGGTTTGGTTTCATGAGTGGGTTGGGAGGCTTTGCACCAATGGCAACTGCAAGATTTGGGAATTTCACATTGTCCGCGGCATTTGGTGGTTTTATACCATCCTTGTTCAACTTTCAGTTGCATGGGTTTCATGATGGGCCCATGTATGGTGGAGCAGCTGGTTATCCTTACGGGTTTTCTAATTCATTCCATGGTGTCCATGCTCATAGATATCCTCTGCATGCTGGTCAACGGCAACAGGACTATTTTCTCAAGAGGCTGCTTCTGTTTGTCATTTTTTGTGTTGTTCTCGCTTTTATTTGGCAATAG 702 0.4672 MASGFGESTSRSPPSPSCSNNNNNNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAVVEEDKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPPPPEPNHHFHQHGFGFMSGLGGFAPMATARFGNFTLSAAFGGFIPSLFNFQLHGFHDGPMYGGAAGYPYGFSNSFHGVHAHRYPLHAGQRQQDYFLKRLLLFVIFCVVLAFIWQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2168 233 PANTHER OS12G0636000 PROTEIN 2 233 - -
Dod09g2168 233 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Dod09g2168 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Dod09g2168 233 MobiDBLite consensus disorder prediction 1 20 - -
Dod09g2168 233 SUPERFAMILY RING/U-box 29 85 - -
Dod09g2168 233 CDD RING-HC_AtRMA_like 30 74 - -
Dod09g2168 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dod09g2168 233 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Dod09g2168 233 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Dod09g2168 233 SMART ring_2 32 72 IPR001841 -
Dod09g2168 233 MobiDBLite consensus disorder prediction 111 126 - -
Dod09g2168 233 MobiDBLite consensus disorder prediction 86 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2168 Dod-Chr9 43070209 43072677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2168 20 232 C3H Transcription Factor Family AT2G23780 62.500 1.91e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2168 K10666 - gmx:100527488 391.349