Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2143 ATGGCTATTCGCGTCACCTTCTCCTTCTCCGGCTACGTCGCCCACAACCTCGTATCCACGGCCAGCGCGCGCGTCTCCAATTCCCGCTGCATCCAAGAATGCTGGATCCGCTCTCGCCTCTTCGGACCCAACCACCACAAACACGATCTTGATCCCTCGTCCGGCGTCCGAAACCTCCATTCCGATCTCCGGAGGCCCAAACCCAATTCTTGGCCCAAGAACCCTGCTGCCTCTTGTGCCTACACTACCCTCGCCGGAGAGATTCTCGGCGACAACTGCAAGAACCCAGTGATCTTGGGCCTGATCGCCGTTATGAAGTCAACGGTTGGGGTTTCTGGGTCGTCAACTGCTGCCATGGGTATTTTCGGTGTTTCGCCTTTCAAAACCACCTCGATCATACCCTTCTTGCAGGGTTCGAAGTGGCTTCCTTGCAACGAGTCACTCCCAGACCCCACAACAAGCTGTGACGTGGATAAGGGCGGAACGCGGCGTTTTGAGGAGGGTGCTGGTGCTGCTGTTGCTGTTGCCGCTGCTGATGCTGGGAAGAGTAGCTGGGTCTCGCGGATGTTGAACGTGTGTTCCGAGGATGCGAAGGCCGCGTTCACCGCCGTCACCGTTAGCTTGCTCTTCAAGTCGTTCTTGGCTGAACCTAGGTCCATTCCCTCTTCTTCTATGTACCCAACTCTCGAAAAGGGTGACCGTATTATGGCCGAGAAGGTTTCTTTCTTCTTTAGAAAACCTAATGTTTCAGATATAGTGATTTTCAAGGCGCCTCCTAAATTACAGGAAGTTGGTTTCTCGTCGACTGATGTGTTTATTAAAAGGATTGTGGCCAAGGCTGGGGACACTGTTGAAGTTCGTGATGGGAAACTTCTGGTGAATGGTGTTGCAGAAGAAGAGGAATTCGCTTTAGAGCCTCTTAATTATGACATGGATCCAGTGGTTGTGCCAGAAGGATGTGTTTATGTTTTAGGAGATAATCGTAATAACAGCTATGATTCGCGTGACTGGGGTCCACTCCCTATTGAGAACATTGTTGGTAGATCCATGTTTCGGTACTGGCCACCATCCAAAATATCTGACTCTGACATGCATCATAGACTTAAACCCGCACCAGCAAACAATGCCGTGGCAATTTCTTGA 1143 0.5127 MAIRVTFSFSGYVAHNLVSTASARVSNSRCIQECWIRSRLFGPNHHKHDLDPSSGVRNLHSDLRRPKPNSWPKNPAASCAYTTLAGEILGDNCKNPVILGLIAVMKSTVGVSGSSTAAMGIFGVSPFKTTSIIPFLQGSKWLPCNESLPDPTTSCDVDKGGTRRFEEGAGAAVAVAAADAGKSSWVSRMLNVCSEDAKAAFTAVTVSLLFKSFLAEPRSIPSSSMYPTLEKGDRIMAEKVSFFFRKPNVSDIVIFKAPPKLQEVGFSSTDVFIKRIVAKAGDTVEVRDGKLLVNGVAEEEEFALEPLNYDMDPVVVPEGCVYVLGDNRNNSYDSRDWGPLPIENIVGRSMFRYWPPSKISDSDMHHRLKPAPANNAVAIS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2143 380 ProSitePatterns Signal peptidases I signature 3. 321 334 IPR019758 GO:0004252|GO:0016021
Dod09g2143 380 MobiDBLite consensus disorder prediction 47 67 - -
Dod09g2143 380 PRINTS Bacterial leader peptidase 1 (S26A) family signature 213 229 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod09g2143 380 PRINTS Bacterial leader peptidase 1 (S26A) family signature 316 335 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod09g2143 380 PRINTS Bacterial leader peptidase 1 (S26A) family signature 272 284 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod09g2143 380 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 365 - -
Dod09g2143 380 PANTHER SIGNAL PEPTIDASE I 1 365 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod09g2143 380 Pfam Signal peptidase, peptidase S26 197 354 IPR019533 GO:0004252|GO:0006465
Dod09g2143 380 CDD S26_SPase_I 216 348 IPR019533 GO:0004252|GO:0006465
Dod09g2143 380 Gene3D Umud Fragment, subunit A 210 369 - -
Dod09g2143 380 ProSitePatterns Signal peptidases I serine active site. 222 229 IPR019756 GO:0004252|GO:0016021
Dod09g2143 380 SUPERFAMILY LexA/Signal peptidase 212 360 IPR036286 -
Dod09g2143 380 MobiDBLite consensus disorder prediction 47 74 - -
Dod09g2143 380 TIGRFAM sigpep_I_bact: signal peptidase I 200 355 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2143 Dod-Chr9 42871589 42874278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2143 225 355 MADS-box Gene Family AT1G29960 31.061 8.35e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2143 K03100 - gmx:100817525 533.102