Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2133 ATGAATAGAAGCTCATCCTCGATCACTGCGTCTTCGTCCGACTCTTCTTCTTCAGAGTCAACCCAAAGGAATAATCCTAACAAACCAGAGAGGATCAAAGGCCCATGGAGCGCAGAAGAAGACCGGATCCTGACCGGACTCGTGGAGCGATACGGGCCTAGAAACTGGTCCCTCATCAGCCGCTACATAAAGGGGAGGTCAGGCAAGTCGTGCAGGCTGAGGTGGTGCAACCAGCTGAGCCCAACAGTGGAGCACCGCCCCTTCTCGCCCCAAGAGGACGAGACCATCATCGCGGCCCATGCCCAGTACGGAAACAGGTGGGCCACCATTGCCCGATTACTACCGGGCCGAACCGATAATTCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGGGCCAGGGACCAACGCGCAACTGCTGCTGCTTGTGCTTCTCTCGTCACAACTACCAACGAGAGGGCCTCTTCAGTGCGCCCTTGCGCGGTGCCCTTGGAGGATGACCCGTTGACCGCGTTGACTCTTGCTCCTCCCGGGATTGGTTGTAGCGGTGGCACGGAGGGGGAGGCCGTGGCGGACCACCGAACCTCGCCGGAGAGTGTGCCGTTGGGGTTTTGGGATATGATGAGGGATGTGATTGCCAGGGAAGTGAGGGAATATGTATCTTCCAATTTCCCTGACCACTCGGGTTCTCATTGA 699 0.5765 MNRSSSSITASSSDSSSSESTQRNNPNKPERIKGPWSAEEDRILTGLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPQEDETIIAAHAQYGNRWATIARLLPGRTDNSVKNHWNSTLKRRARDQRATAAACASLVTTTNERASSVRPCAVPLEDDPLTALTLAPPGIGCSGGTEGEAVADHRTSPESVPLGFWDMMRDVIAREVREYVSSNFPDHSGSH* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2133 232 Gene3D - 86 156 - -
Dod09g2133 232 PANTHER MYB PROTEIN-RELATED 1 218 - -
Dod09g2133 232 Pfam Myb-like DNA-binding domain 36 94 - -
Dod09g2133 232 MobiDBLite consensus disorder prediction 1 37 - -
Dod09g2133 232 CDD SANT 35 77 IPR001005 -
Dod09g2133 232 SUPERFAMILY Homeodomain-like 30 126 IPR009057 -
Dod09g2133 232 Gene3D - 32 84 - -
Dod09g2133 232 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Dod09g2133 232 MobiDBLite consensus disorder prediction 1 28 - -
Dod09g2133 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 134 IPR017930 -
Dod09g2133 232 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Dod09g2133 232 CDD SANT 87 130 IPR001005 -
Dod09g2133 232 PANTHER MYB TRANSCRIPTION FACTOR 1 218 - -
Dod09g2133 232 SMART sant 32 81 IPR001005 -
Dod09g2133 232 SMART sant 84 132 IPR001005 -
Dod09g2133 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 83 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2133 Dod-Chr9 42799149 42800483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2133 30 153 MYB Transcription Factor Family AT3G50060 68.548 3.07e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g2133 Myb_DNA-bind_6 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2133 - - vra:106761536 307.76