Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2120 ATGGCGGAGGCATACGAGGAGAGCCGGCGGCAAAGACTGGAGGAGAACAGGAAGAGGATGGAAGCTCTCAATCTGCCCATCCTTTCCCAAGCCCTCCATCATAACTCTCCCAATTCCAAAACCAACTCCTCTCCGCTGAAGCGCGTGAAATCCCGCACCATCGAGAAGCAGGTGGTTGTGGTGAGGAGGTCCAGCCGCGTCGCCAAGTTGCCCACTCCTGTCTACAAAGAATTGGTTATTGATCGCGTAGCAATACCTAGAAGAGTTTACAATAGACACAGGGATTTTTCGAACCGGGTATATGCTTCAGAGGAAGCAAGAGAGGAAGCCCTTGAGAAGGCCTACAAGATACAGTCCGATTTAGACTCTCAGTCTGAGCATCCAACCTTTGTAAAGTCAATGCTTCAGTCACATATCAGCGGGGGATTCTGGCTGGGCCTTCCACGGCACTTCTGCGACAGAAACCTTCCAAAAAAGGACGAAGTGATGACTTTGATTGATGAGGATGGGAGTGGGTATCCAACAATATATTTGCCACGAAAGACAGGACTTAGTGGTGGATGGAAAGGCTTTGCGGTTGCCCATAGCCTAGCTGATGGGGACGCTTTAGTTTTTCAATTAATCAAGCGCACTGAATTCAAGGTGTACATTGTTAGAGTGAATACTGCTGAAGAGGGTAAACAGCTTGAATGA 693 0.4877 MAEAYEESRRQRLEENRKRMEALNLPILSQALHHNSPNSKTNSSPLKRVKSRTIEKQVVVVRRSSRVAKLPTPVYKELVIDRVAIPRRVYNRHRDFSNRVYASEEAREEALEKAYKIQSDLDSQSEHPTFVKSMLQSHISGGFWLGLPRHFCDRNLPKKDEVMTLIDEDGSGYPTIYLPRKTGLSGGWKGFAVAHSLADGDALVFQLIKRTEFKVYIVRVNTAEEGKQLE* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2120 230 SUPERFAMILY DNA-binding pseudobarrel domain 123 221 IPR015300 -
Dod09g2120 230 Pfam B3 DNA binding domain 130 219 IPR003340 GO:0003677
Dod09g2120 230 ProSiteProfiles B3 DNA-binding domain profile. 130 221 IPR003340 GO:0003677
Dod09g2120 230 Gene3D - 102 222 IPR015300 -
Dod09g2120 230 PANTHER B3 DOMAIN-CONTAINING PROTEIN 4 226 - -
Dod09g2120 230 SMART B3_2 130 221 IPR003340 GO:0003677
Dod09g2120 230 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 226 IPR044837 -
Dod09g2120 230 CDD B3_DNA 128 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2120 Dod-Chr9 42684224 42688079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2120 47 225 B3 DNA Binding Superfamily AT5G42700 58.889 1.41e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod09g2120 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2120 - - gmx:100797091 335.88