Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2094 ATGGCACAAGTTCAAGTGAGCCCTAATGCGAACGGTGAGGCCGCACCTGTTGTTGCTGTGAGCGCGAACCAGTCGGTGATGACGTCGCTCTACGTTGGGGATCTTGACCGCAACGTCAAGGATCCGCAGCTCTACGATCACTTCATCCAGATCGGCCAGGTCGTCTCCGCTCGCGTCTGCAGGGACTTAGCCACCCAGCAATCCCTCGGTTACGGCTACGTCAATTTCAGTAACCCTCAAGACGCGGCAAGAGCCTTGGAGGAGCTGAATTTCACTTCGCTGAACAACAAGCCCATTAGGATCATGTATTCTCATCGGGACCCTAGCGCCCGCAATAGTGGCCATGCTAATATTTTTATCAAGAATTTGGATAAGTCGATTGATCACAAAGCTCTGCATGATACTTTTTCGTCTTTTGGCACTATTCTTTCCTGCAAGATAGCCACGGATGCTTCTGGCCAGTCCAAAGGATTTGGTTTTGTACAATTTGAGAAGGAAGAGGCTGCACAAAGTGCAATTGACAAGTTAAATGGAATGTTTTTGAATGATAAACAGGTCTATGTAGGTCATTTCCTTAGAAAGCAGGACAGAGAGAGTGTTTTGAACGCTAACACAAAATATAGTAATGTTTATGTGAAAAACCTGTCAGAGGCGATGGCGGATGATGACTTGAAGAAAATTTTTGGAGAGTATGGGACCATTACTAGTGCTGTAGTGATGAGAGATGCAGATGGTAGATCCAAATGTTTTGGTTTTGTCAATTTTGAAAATGCTGATGATGCTGCTAAAGCTGTTGAGGCACTTAATGGAAAGAAATTGGATGATAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAAAGGGAGAATGAGCTGAAAGAGCGCTTTGAGCAGAGTATGAAGGAAGCTGCTGACAAATATCAAGGTGCTAACTTGTACCTCAAGAACTTGGATGATAGCATCGGTGATGAAAAGCTCAGGGAACTTTTTGCTGAGTTTGGAACAATAACTTCATGCAAGGTTATGCGTGATCCACATGGAGTTAGTCGAGGATCTGGATTTGTTGCATTTTCAACTCCTGAGGAAGCAGCTCGAGCTCTCGATGAGATGAAAGGTAAAATGATTGCTGGCAAACCTCTCTATGTTGCCCTTGCAGAGAGAAAAGAAGAGAGGAAAGCAAAGTTGCAGGCACAATTTTCACAAATGACAACTGTTTCAATGGCTCCTTCTGTTGCACCTCATCTGCCACTCTATCCTCCTAGGGCCCTGGGTCTTGGGCATCCCTTTATGTATGGGCAAGCACCTCCAGCTGTCATTCCTCAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCTGGGATGAGGCCAGGTGCTCCAATGCATAGCTTCTTTGTTCCAGTGGTTCAGCAGGGTCAACAAGGACAGCGCCCAGGTGGACGCCGAGGAACCGGTCCTGTGCAACAACCCCAGCAGCCGGTGCCGTTGATGCAGCAGCAGATGCTTCCAAGGGGACGTGGCTATCGTTACCCATCTGGTCGCAACATGCAGGATGCTCCAATGCTCACAGTCAATTATGACATGGGTGCGCTGCCCATCCGGGATGCCATGGGACAGCCAATGCCCATTCAGGCCTTGGCTACAGCCCTTGCAAATGCTCCTCCTGGACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCACTTGTTGATAAGCTGGAACATGATGCAGCAGCAAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTGATTGAGTCACCAGATGCTCTCAAGGCAAAAGTTGCCGAGGCCATGGATGTATTGAAAAATGTTGCTCAGCAGCAAGCCCCAGCCGATCAACTGGCTTCACTCTCACTGAATGACAATTTGGTGTCCTAG 1917 0.4763 MAQVQVSPNANGEAAPVVAVSANQSVMTSLYVGDLDRNVKDPQLYDHFIQIGQVVSARVCRDLATQQSLGYGYVNFSNPQDAARALEELNFTSLNNKPIRIMYSHRDPSARNSGHANIFIKNLDKSIDHKALHDTFSSFGTILSCKIATDASGQSKGFGFVQFEKEEAAQSAIDKLNGMFLNDKQVYVGHFLRKQDRESVLNANTKYSNVYVKNLSEAMADDDLKKIFGEYGTITSAVVMRDADGRSKCFGFVNFENADDAAKAVEALNGKKLDDKEWYVGKAQKKSERENELKERFEQSMKEAADKYQGANLYLKNLDDSIGDEKLRELFAEFGTITSCKVMRDPHGVSRGSGFVAFSTPEEAARALDEMKGKMIAGKPLYVALAERKEERKAKLQAQFSQMTTVSMAPSVAPHLPLYPPRALGLGHPFMYGQAPPAVIPQAGFGYQQQLVPGMRPGAPMHSFFVPVVQQGQQGQRPGGRRGTGPVQQPQQPVPLMQQQMLPRGRGYRYPSGRNMQDAPMLTVNYDMGALPIRDAMGQPMPIQALATALANAPPGQQRTMLGEALYPLVDKLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLKNVAQQQAPADQLASLSLNDNLVS* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2094 638 PANTHER POLYADENYLATE-BINDING PROTEIN 17 624 - -
Dod09g2094 638 Gene3D - 294 398 IPR012677 -
Dod09g2094 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 542 619 IPR002004 GO:0003723
Dod09g2094 638 Coils Coil 386 406 - -
Dod09g2094 638 PANTHER RNA BINDING PROTEIN 17 624 - -
Dod09g2094 638 SMART rrm2_1 117 189 IPR003954 GO:0003676
Dod09g2094 638 SMART rrm2_1 312 384 IPR003954 GO:0003676
Dod09g2094 638 SMART rrm2_1 29 102 IPR003954 GO:0003676
Dod09g2094 638 SMART rrm2_1 209 281 IPR003954 GO:0003676
Dod09g2094 638 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
Dod09g2094 638 Pfam Poly-adenylate binding protein, unique domain 550 614 IPR002004 GO:0003723
Dod09g2094 638 Gene3D - 538 621 - -
Dod09g2094 638 Gene3D - 193 293 IPR012677 -
Dod09g2094 638 Gene3D - 2 115 IPR012677 -
Dod09g2094 638 MobiDBLite consensus disorder prediction 471 491 - -
Dod09g2094 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Dod09g2094 638 SMART rrm1_1 209 281 IPR000504 GO:0003723
Dod09g2094 638 SMART rrm1_1 312 384 IPR000504 GO:0003723
Dod09g2094 638 SMART rrm1_1 29 102 IPR000504 GO:0003723
Dod09g2094 638 SMART rrm1_1 117 189 IPR000504 GO:0003723
Dod09g2094 638 CDD RRM4_I_PABPs 310 388 - -
Dod09g2094 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Dod09g2094 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Dod09g2094 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Dod09g2094 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Dod09g2094 638 Gene3D - 116 190 IPR012677 -
Dod09g2094 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Dod09g2094 638 SMART poly_2 554 617 IPR002004 GO:0003723
Dod09g2094 638 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 615 IPR006515 GO:0003723
Dod09g2094 638 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Dod09g2094 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Dod09g2094 638 CDD RRM3_I_PABPs 207 286 - -
Dod09g2094 638 CDD RRM2_I_PABPs 114 190 IPR045305 -
Dod09g2094 638 Coils Coil 283 307 - -
Dod09g2094 638 SUPERFAMILY PABC (PABP) domain 491 625 IPR036053 GO:0003723
Dod09g2094 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Dod09g2094 638 CDD RRM1_I_PABPs 29 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2094 Dod-Chr9 42475155 42479206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2094 24 637 Eukaryotic Initiation Factors Gene Family AT1G49760 67.563 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2094 K13126 - gmx:100784442 947.192