Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2064 ATGCTTCCAGTTTTCGCCTACATAGTCGAGTTGATAATTATTCCACGAAAAATAAGAACGGGGGAGTGTGAAAAGATGGGGAGAGTGAAGCTTCCGATCAAGAAGATTGAGAACACAACAAATAGGCAAGTCACTTTCTCAAAGAGGAGGAATGGGCTAATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTTGCTCTCATCATGTTTTCCCCATCTGGGCGACCCACTCTCTTCTCTGGCAACAGAAGCATTGAAGAGATTCTAGAACGATATATTAATCTTCCGGACCAGGAGCGCGGAAAGATCCATAATCAAGAGAACATTCAGAGGATGCTTAACAAGCTGAAAGTTGAGACCGATCAAATATGCCAAGCCCCTAGTCCGATGAATACAGATTCCCAGATTGAGGAGATCCAAAGAGAAATTTTTGTTTGCAAGTCTCAATTGGAAGAGATGGAGAAGCGGCTGAGGATATTTGAAGGTGACACATCTGAGATCACTACACTGTGTGAGGCTGAATATCGCGAACAAGTCCTTCACGAAACTCTAAAACATGTGCACCTGCGAAAATGTTTTTTGGCGGAAGAGTATAATTTTGGTACATATCCACAGGTACCTCCAGCAAAAACTGTAGATGTTGATGGATTTGTTGCCAGGACATCAAAGAACGCGGTAGATTGGCTTTCACAAGGGGATCCATGTGCTGACTTTGCGAATGCCTATGAGCCTGCTCCTTTCGGAGATCAACAATCACATAGTGCTGTTGTTGATATGTTAGCACCGGTTTCTACCCTTCTGCCTGCTCCAAACACGGATCAGGATGGTCAAATGAATTCAAGGGATAGTTTAGAGGCATGCAATAATACGCTACATCCTGGGTTTGGACGAGTTAACGACATCAATTCGCCCTCTTGGGGGCACCTCCATCATTTAGGGAGTGGATCTTTGTTGGCGGCAGAGGCAAGGGAAGGACAACTAATTGAACAGTATTTTTCTCAATTTACCTAA 1020 0.4353 MLPVFAYIVELIIIPRKIRTGECEKMGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRPTLFSGNRSIEEILERYINLPDQERGKIHNQENIQRMLNKLKVETDQICQAPSPMNTDSQIEEIQREIFVCKSQLEEMEKRLRIFEGDTSEITTLCEAEYREQVLHETLKHVHLRKCFLAEEYNFGTYPQVPPAKTVDVDGFVARTSKNAVDWLSQGDPCADFANAYEPAPFGDQQSHSAVVDMLAPVSTLLPAPNTDQDGQMNSRDSLEACNNTLHPGFGRVNDINSPSWGHLHHLGSGSLLAAEAREGQLIEQYFSQFT* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2064 339 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 26 320 - -
Dod09g2064 339 Gene3D - 38 121 IPR036879 GO:0003677|GO:0046983
Dod09g2064 339 SUPERFAMILY SRF-like 27 108 IPR036879 GO:0003677|GO:0046983
Dod09g2064 339 PRINTS MADS domain signature 63 84 IPR002100 GO:0003677|GO:0046983
Dod09g2064 339 PRINTS MADS domain signature 48 63 IPR002100 GO:0003677|GO:0046983
Dod09g2064 339 PRINTS MADS domain signature 28 48 IPR002100 GO:0003677|GO:0046983
Dod09g2064 339 ProSiteProfiles MADS-box domain profile. 26 86 IPR002100 GO:0003677|GO:0046983
Dod09g2064 339 CDD MADS_MEF2_like 27 100 IPR033896 GO:0000977|GO:0045944
Dod09g2064 339 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 81 IPR002100 GO:0003677|GO:0046983
Dod09g2064 339 SMART madsneu2 26 85 IPR002100 GO:0003677|GO:0046983
Dod09g2064 339 Coils Coil 139 159 - -
Dod09g2064 339 PANTHER SERUM RESPONSE FACTOR HOMOLOG 26 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2064 Dod-Chr9 42144515 42148598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2064 26 197 Type I MADS-box Gene Family AT1G22130 51.630 9.01e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod09g2064 SRF-TF 4.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2064 - - gmx:100776548 404.445