Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2049 ATGGAAATGGCACTAGGCAGTTACACTTACACCTCAGAGGAGGATAATACTAATCAGGAAAATAGTGAAGGAGCAACTACTTCATCGTCGAAATTACCACCTGCGGCTCTCAACTTAAATGGGAAGACAAGAGCCAGTAGAGGATCAGCAACAGATCCCCAGAGCCTTTATGCAAGGAAGAGAAGAGAGAGGATAAATGAGAGACTAAGAATTCTACAGAATCTTGTCCCCAACGGAGCCAAGGTTGATATAAGCACAATGCTCGAAGAGGCGCTCCATTACGTGAAGTTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCTGATGACATGTGGATGTACGCTCCGATTGCTTATAATGGACTTGACATTGATCTCAGCAAGAAGATTTTTCAACCTTTATGA 402 0.4303 MEMALGSYTYTSEEDNTNQENSEGATTSSSKLPPAALNLNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGAKVDISTMLEEALHYVKFLQLQIKLLSSDDMWMYAPIAYNGLDIDLSKKIFQPL* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2049 133 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Dod09g2049 133 SMART finulus 55 104 IPR011598 GO:0046983
Dod09g2049 133 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 129 - -
Dod09g2049 133 Pfam Helix-loop-helix DNA-binding domain 59 99 IPR011598 GO:0046983
Dod09g2049 133 CDD bHLH_AtIND_like 50 112 - -
Dod09g2049 133 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 6 129 - -
Dod09g2049 133 MobiDBLite consensus disorder prediction 1 59 - -
Dod09g2049 133 Gene3D - 50 114 IPR036638 GO:0046983
Dod09g2049 133 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 116 IPR036638 GO:0046983
Dod09g2049 133 MobiDBLite consensus disorder prediction 9 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2049 Dod-Chr9 42004006 42005201 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2049 7 126 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 77.049 3.69e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g2049 HLH 5.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2049 - - qsu:112027126 188.348