Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2047 ATGGAACCTCTTGGTCTTGGAGTCTCCCCTGATGGAGAATGGGATTGGTTTCACAGAATTTTTGCCATAGAAGAGCAAGATTACTTGCCATCACAATTTTTCAATCTCAGTTCATCACTTCTGCCTGGGGACGAGGATGGGAACACTGGAATGCAAACCATGTTTTCCACCAATCTTGAATCTCAGCTAAATGAGAAGAATAATGTGAGCTTGAATGAAGATGAGAGAAGCGATGGATCTGAGAAATCTGATCACTGTCAAGTGGAACCTATTTTTCCTTCCCCCAACCTCAAAAGGAAGCTTGATATGCCAGCATTGGAGGTTCCTGAAGAGGACAAAATAAACACTAACTCATCCGGGGGTCAGAAGAAAAGGCCTCGTGCTTCAAAAGATGTGCAAAGATGCGTGAAGAATGCAAGGTCCAAGAAGAACCAGAAACCTGACAGAAGTGAGAACGAGGCAGAAGAGACTAATGCAGGATCAGATGGACATGGCTCCAGTAGTTACAACTCAGAGGACGATAATGCTAATCAGGAAAACAGCGGAGGAGCTACTTCAACATTGAAATCACCGAAGACCAGAGCCAGTAGGGGATCATCAGCAACAGATCCTCTCAGCCTTTATGCAAGGAAGAGAAGAGAGAGAATAAATGAGAGACTAAGAATTCTGCAGAGTCTTGTCCCCAACGGAACAAAGGTTGATATAAGCACAATGCTCGAAGAGGCAGTCCATTACGTGAAATTTTTGCAGCTTCAGATCAAGCTTTTAAGCTCTGATGATTTGTGGATGTACGCTCCCATAGCTTATAATGGAATTGACATTGGACTCAATCTTAGCTGA 840 0.4357 MEPLGLGVSPDGEWDWFHRIFAIEEQDYLPSQFFNLSSSLLPGDEDGNTGMQTMFSTNLESQLNEKNNVSLNEDERSDGSEKSDHCQVEPIFPSPNLKRKLDMPALEVPEEDKINTNSSGGQKKRPRASKDVQRCVKNARSKKNQKPDRSENEAEETNAGSDGHGSSSYNSEDDNANQENSGGATSTLKSPKTRASRGSSATDPLSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGIDIGLNLS* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2047 279 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 52 277 - -
Dod09g2047 279 SMART finulus 206 255 IPR011598 GO:0046983
Dod09g2047 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 265 IPR036638 GO:0046983
Dod09g2047 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Dod09g2047 279 CDD bHLH_AtIND_like 201 263 - -
Dod09g2047 279 PANTHER TRANSCRIPTION FACTOR BHLH54 52 277 - -
Dod09g2047 279 MobiDBLite consensus disorder prediction 69 85 - -
Dod09g2047 279 MobiDBLite consensus disorder prediction 159 203 - -
Dod09g2047 279 Gene3D - 206 258 IPR036638 GO:0046983
Dod09g2047 279 MobiDBLite consensus disorder prediction 69 209 - -
Dod09g2047 279 MobiDBLite consensus disorder prediction 124 158 - -
Dod09g2047 279 Pfam Helix-loop-helix DNA-binding domain 210 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2047 Dod-Chr9 41987833 41989300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2047 47 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 46.182 2.49e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g2047 HLH 7.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2047 - - mtr:MTR_3g103030 276.174