Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2043 ATGGCTCTTAATCTTCCTCCGCCTCCCGAAATCAACATCGAAGCCGAATATTGCCCTCAAGCGGTGATTGACTGGTACGTGTGTTCGGCATCAAAAGATCAAAGGCGCAATGCGGAACTGTCCTTGAAGGCAAAGAAGCACCTCAAAGCCTTGGGTTGGGAGCTTTGGTACTACAACAAGAAAACTCGCTGGGAACTGCGTTACAGATCCCCCACCAATGGAAGGAACTACATCTCTCTCAGAACTGCATGCGAATCCTGCATTGAAGACGGAGGCTGTGGCCCTCAAAACCTCTCCCTTCTCCCTGTTCACCCACCACCGCCTTCAACTGCACTTGTTTCATCTTCTCCTGCACAAGAAGAAGAAGCCCTTGAAACACAAATCTCTCACCAAGCAGTGGTTGAACCTGAGCCCCCTTCAACTATTACCATTTCGTCTTCTTATGCGGAAGAAGAACAACGCCCTCCGCTGATGATCAGAAAACCAAGAAAAATATGCAAGAAACCTAGGGGGAAGCCAAGAAGACTCAAGAAGAGAAAAGGGGAGTCCTTGGATGAAGAATGGACTCCAACACAAGCTGGGTTTGATGCATCGAGTTCGAGTTCATGTGGTGGTGGTGGTAAAAGCGGTGGCAAGGTTTTACGATCAAGCAAAAGAGCGAGGCTTGGTGATGAGGCACAGAGTTCTGACTGCTCACATAGGAACCCTAGAACGGTTCTCTCTTGGCTCATAGACAACAAAGTGGTGCTCCGAGAAGCGAGAGTGCATTGCCGCGGTGGGAACAATGTGGTGAAGAGAGGGAGGCTATTGCGTTCTGGGGTTTCTTGTGATTGTTGTGACTCGGTTTTCACCCTCACGCGCTTCGAGGCTCATGCCGGTTGCACCAAGCACAGACCCTCCGCGACTATCTTCTTGGAAGATGGAAGGTCATTGATGGATTGCCAAAGGGAGGCGTTGAGCAACTCTCAGGAGAACATGCGTGACGATTTTGTGAGTGGAAACGGTGGTCTTCAAGACCAAAACGACAGCATTTGTTCGGTTTGTCTCTATGGGGGCGAGCTATTGCTGTGTGATCGATGCCCTTCATCATTTCACCCTGGTTGTGTTGGTCTTGAGGAGGTTCCAGATGGTGATTGGTTCTGCCCTCCATGCTGCTGCAAGATATGCAACTGTCCCAGATTCAGAGAAGATTGTGCAGATCATGTGGATAACAGTGTCATAGCCTGCGATCAGTGTGAGCGCAAGTACCACATTGGGTGCCTAAGGTCTAGAGGCTTTACTAAATTGAAGAACAACCCTGACGAGATTTGGTTATGCAATGGAGCTTGTGAGAACATATTTTTCAGCCTTCAGATGATGATTGGAAAACCAATTCCTGTGGGTGGAGATAATCTAACTTGGACATTGTTGAAGACCATCAAGAGCACTGTCAGCTGTGGTGATCATGAACTTGGAGGCTTGAGTCAAATCCAAAGCAAGCTAAGTGTGGCCCTTGGAGTAATGCATGAATGTTTTGAGCCAATCTCTGACGCTCTCTCAGGAAGGGATATTGTTGCGGATGTTATCTTCAGCAGAGGTTCAAAGCTTAAGCGTTTGAACTTTAGAGGGTTCTACACTGTGATTCTGGAGAGGAATGATGAGGTTATTTCTGTTGCGAACATCAGGATATTTGGCCACAAGGTTGCAGAGGTTCCTCTTGTGGCCACCAGAATGCAGTTTCGAAGGCTTGGAATGTGCCGAATCTTGATGGATGAGCTTCAGAAGCAGCTGACTCGCTTGGGAGTGGAGAGGATGGTTTTGCCTGCTGCTCACTATTTGATAGACACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTCAGATAAGTATCAATATTTGGATTATACTTTTCTAGACTTCCAGGATACCACCTTGTGCCACAAATCATTGAAGGAACCTCGAATGCTATGTCTGGCCTGA 1965 0.4768 MALNLPPPPEINIEAEYCPQAVIDWYVCSASKDQRRNAELSLKAKKHLKALGWELWYYNKKTRWELRYRSPTNGRNYISLRTACESCIEDGGCGPQNLSLLPVHPPPPSTALVSSSPAQEEEALETQISHQAVVEPEPPSTITISSSYAEEEQRPPLMIRKPRKICKKPRGKPRRLKKRKGESLDEEWTPTQAGFDASSSSSCGGGGKSGGKVLRSSKRARLGDEAQSSDCSHRNPRTVLSWLIDNKVVLREARVHCRGGNNVVKRGRLLRSGVSCDCCDSVFTLTRFEAHAGCTKHRPSATIFLEDGRSLMDCQREALSNSQENMRDDFVSGNGGLQDQNDSICSVCLYGGELLLCDRCPSSFHPGCVGLEEVPDGDWFCPPCCCKICNCPRFREDCADHVDNSVIACDQCERKYHIGCLRSRGFTKLKNNPDEIWLCNGACENIFFSLQMMIGKPIPVGGDNLTWTLLKTIKSTVSCGDHELGGLSQIQSKLSVALGVMHECFEPISDALSGRDIVADVIFSRGSKLKRLNFRGFYTVILERNDEVISVANIRIFGHKVAEVPLVATRMQFRRLGMCRILMDELQKQLTRLGVERMVLPAAHYLIDTWTNSFGFARMTDSDKYQYLDYTFLDFQDTTLCHKSLKEPRMLCLA* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2043 654 ProSiteProfiles Zinc finger PHD-type profile. 342 387 IPR019787 -
Dod09g2043 654 SMART PHD_3 388 444 IPR001965 -
Dod09g2043 654 SMART PHD_3 344 385 IPR001965 -
Dod09g2043 654 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 538 632 IPR016181 -
Dod09g2043 654 MobiDBLite consensus disorder prediction 106 232 - -
Dod09g2043 654 Pfam Tify domain binding domain 267 318 IPR032308 -
Dod09g2043 654 MobiDBLite consensus disorder prediction 133 150 - -
Dod09g2043 654 Pfam PHD-finger 344 386 IPR019787 -
Dod09g2043 654 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 648 - -
Dod09g2043 654 CDD NAT_SF 540 600 - -
Dod09g2043 654 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 500 634 IPR000182 GO:0016407
Dod09g2043 654 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 10 648 - -
Dod09g2043 654 SUPERFAMILY FYVE/PHD zinc finger 337 392 IPR011011 -
Dod09g2043 654 Gene3D - 522 630 - -
Dod09g2043 654 MobiDBLite consensus disorder prediction 160 177 - -
Dod09g2043 654 MobiDBLite consensus disorder prediction 192 206 - -
Dod09g2043 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 387 IPR013083 -
Dod09g2043 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 446 IPR013083 -
Dod09g2043 654 MobiDBLite consensus disorder prediction 217 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2043 Dod-Chr9 41921277 41923241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2043 40 593 PHD Transcription Factor Family AT5G58610 36.486 9.20e-107 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod09g2043 TDBD 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2043 - - aip:107608518 623.624