Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2027 ATGCCTCTATACCAGCCATCTAACGGAAGAATACGAGGGGACAACGATGAAGAGAAGCTTGATGTGTCTAAAGGCAGTGGCATGACTGAGAAAATGGATCTGAAGATGTTGATTGATGAGTTGGCTGAATCTATTGATGTGCCATCGGATTTCATCTGCCCCATTTCACTAGAACCAATGCAAGACCCCGTGACCCTTTGCACGGGCCAAACCTACGACAGGTCCAACATACTCAAATGGTTCTCCCTCGGTCACAATACCTGTCCCACAACAATGCAGGAGCTTTGGGACGATTCAATCACGCCCAACACCACCCTTAACCGCTTCATCCTAACCTGGTTCTCGCAGAAGTACCTGGCCATGAAGAACAAGTTGGAGTACGTGCAGGGCAGAGCCTTGGAGCTCTTGGACACGCTCAAGAAGGTAAAGGGTCAAGCCAGAGTTCAAGCTCTCAAGGAACTTCGCCAGCTTGTTGATTCACGTGCGTCAGTAAGGAAGAAGGTTGAAGAAAACGGTGGGCTTACTTTGGTTTCTTCTTTATTGGGTCCTTTTACCTCTCATGCTGTTGGGTCAGAAGCCATTGGGATCCTTGTGAATATGGACTTGAGTTCAGAGCTGAAGAAAAATCTGATGCATCCAGCGAAGATGTCGCTGTTGGTGGATATCATGAACGAGGGAACCATCGAGACAAAGATGAATTGTGCAAAATTGATTGAAATATTATTGGTGGAAGGGAATGGGTCCGAGACAGAAGTGGTATCAAGCTTGAGCCTTTTGGTTGGGTTGTTAAGGTTAGTGAGGGATAAGAAGCACACAACTGGGGTCTTAACTGGCCTCATGCTACTCAAAATTATTATATGTTCTCGCGAGTCAGTTAGAAGGTCGGTTGTAAGCATAGGGGCAGTGCCTCAATTGATTGAGCTGTTGCCCACTCTGAACGATGAGTGCTTGGAGATAGCCCTATACATTCTTGAGGTGTTGTCAACCCTTCCAGAGGGAAGAGTGGCCTTGAAAGAGTGCCCAAACATTATACCCAATGTGGTGAAGTTGTTGATGAGAGTCTCCGAGAGCTGCACCCAATTCGCCTTGTCAATCTTGTGGGCTATCTACAAGCTTGCCCCAGAGGAATGTGCTTCAAAGGCTGTGGAAGCCGGGTTGGCGGCAAAGCTGCTTCTAGTGATTCAGAGCGGTTGCAACCCCATGTTGAAGCAGATGTCTTCTGAGTTCTTGAAAATCTGCAGCTTGAATTACTCTACTAGTATCTTGATTTCCAAGTGTATGCTCACCACAACAATACAATGA 1302 0.4685 MPLYQPSNGRIRGDNDEEKLDVSKGSGMTEKMDLKMLIDELAESIDVPSDFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSITPNTTLNRFILTWFSQKYLAMKNKLEYVQGRALELLDTLKKVKGQARVQALKELRQLVDSRASVRKKVEENGGLTLVSSLLGPFTSHAVGSEAIGILVNMDLSSELKKNLMHPAKMSLLVDIMNEGTIETKMNCAKLIEILLVEGNGSETEVVSSLSLLVGLLRLVRDKKHTTGVLTGLMLLKIIICSRESVRRSVVSIGAVPQLIELLPTLNDECLEIALYILEVLSTLPEGRVALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPMLKQMSSEFLKICSLNYSTSILISKCMLTTTIQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2027 433 SUPERFAMILY ARM repeat 135 416 IPR016024 -
Dod09g2027 433 Pfam U-box domain 47 117 IPR003613 GO:0004842|GO:0016567
Dod09g2027 433 MobiDBLite consensus disorder prediction 1 25 - -
Dod09g2027 433 SMART Ubox_2 50 113 IPR003613 GO:0004842|GO:0016567
Dod09g2027 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 129 IPR013083 -
Dod09g2027 433 MobiDBLite consensus disorder prediction 11 25 - -
Dod09g2027 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 21 432 - -
Dod09g2027 433 SUPERFAMILY RING/U-box 43 118 - -
Dod09g2027 433 CDD RING-Ubox_PUB 51 93 IPR045210 -
Dod09g2027 433 ProSiteProfiles U-box domain profile. 46 120 IPR003613 GO:0004842|GO:0016567
Dod09g2027 433 Gene3D - 132 412 IPR011989 -
Dod09g2027 433 PANTHER WDSAM1 PROTEIN 21 432 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2027 Dod-Chr9 41785553 41788796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2027 1 433 U-box Gene Family AT3G49810 59.645 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2027 - - gmx:100808281 645.195