Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2015 ATGAACTTGAAGATGGATTCTGATAAAGCGAAGCTGTTCGTGGGGGGCATCTCTCGTGACACCAACGAACACGTTCTCAGAGACCACTTCGCCAAGTACGGCGCCGTTTTGGACTCCACAATCTCGCTTGACCGCAACACCCGAAGCCCTAGAGGCTTCGGCTTCGTCACCTTCTCCGATCTCTCCGCAGCTCATAAAGCTCTTCACGACACCCATGTCATTCTCGGAAGAACGGTAGAAGTGAAGAAAGCAATACCCAGAAGTGAACAACAGCATCAAAACCAAATACAGAGTAGGGGTGCGAGTAATTGTAGTAGTAATAATGACTGTAGCAGTGACAACATTAGGACTAAAAAGATTTTCGTAGGTGGTTTATCAGCTGGTATATCTGAGGAGGAGTTCAGGAAATACTTTGAGAGGTTTGGCCGGATAACTGATGTAGTGGTGATGCAGGACAGCATAACTCACCGGCCCAGGGGGTTTGGCTTCATCACTTTTGACTCCGAGGAATCGGTTCAAAATGTTATGGTGAAAAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCGAAAGAGGGGAACCATAGTTATGATGGTTTCAATAATAAATTAAAATATAGGAATGAGAGAGGAGCCTCTAAAACTTTTCCTCCTTATAGTCCTAGTTACGCACTCCCTGGCTTTGCACCTCAGCCTTGGTATAGTAGTGATGGAGTGTATGTCTATGGATCAAGCAACTATGGTTGGTACCCTATGGGTGGGTATGGGGGTAATGGATATGCTGTTCCAGCTGATATCTCTAGGAACTTCTGGTTTGGGCCCATGATCACCGGTCCTCAGGCATGTCAGGTGCCTTATGCTAATGCTTCACCAAGTGTTGCATATATGGGTGGTAGGGTTGGAGTAGTAGGTATTGGAGCTGGAGCCAGGGGATACGATGGAATCCTTGGGTCTGCAACAAATTTGAAATTTGATCCACCTTTTACTGCTAATGGATTTGTTCCAGGCTATGTGACATCACCTCAAGGAGTGAAGCAGGATGTTGACTCTTCAAGTTTTATAGGAACCAATGGTGGAATTCCTAGTTGA 1104 0.4592 MNLKMDSDKAKLFVGGISRDTNEHVLRDHFAKYGAVLDSTISLDRNTRSPRGFGFVTFSDLSAAHKALHDTHVILGRTVEVKKAIPRSEQQHQNQIQSRGASNCSSNNDCSSDNIRTKKIFVGGLSAGISEEEFRKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHSYDGFNNKLKYRNERGASKTFPPYSPSYALPGFAPQPWYSSDGVYVYGSSNYGWYPMGGYGGNGYAVPADISRNFWFGPMITGPQACQVPYANASPSVAYMGGRVGVVGIGAGARGYDGILGSATNLKFDPPFTANGFVPGYVTSPQGVKQDVDSSSFIGTNGGIPS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2015 367 MobiDBLite consensus disorder prediction 85 109 - -
Dod09g2015 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Dod09g2015 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Dod09g2015 367 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 354 - -
Dod09g2015 367 MobiDBLite consensus disorder prediction 88 109 - -
Dod09g2015 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 354 - -
Dod09g2015 367 Gene3D - 2 97 IPR012677 -
Dod09g2015 367 SMART rrm1_1 11 82 IPR000504 GO:0003723
Dod09g2015 367 SMART rrm1_1 119 191 IPR000504 GO:0003723
Dod09g2015 367 Gene3D - 115 204 IPR012677 -
Dod09g2015 367 SUPERFAMILY RNA-binding domain, RBD 111 206 IPR035979 GO:0003676
Dod09g2015 367 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Dod09g2015 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Dod09g2015 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2015 Dod-Chr9 41682078 41684554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2015 12 256 Eukaryotic Initiation Factors Gene Family AT2G36660 25.769 7.91e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2015 K14411 - gmx:100816822 534.643