Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2012 ATGAGTGATCCTGAAAATGCCATGGGGCTTCAACGTGAAAAAAGGGGCATTCTGAATTGTCCTTCATCGGGTTTGAGGACAAGTGTTTCAGAAATAGCAAATAATTCCGTGTCCATGTCTGAGCCTTCAAATGTAGCTAATCCCTTGCTTGCTTCTTCTGCTTGGGATCCACTTGTTTCCTTAAGTCAGGTTCAATCTTTTGGAGTCCCTTCAATGGTTTCTCACAGTGAGTTTGCCAATTCATTGTACCCTTTTGTTTTGGAAAATCAGGGAATGAGCAGCTATTCTCATGTTGTTCAATATATTTCTGACTCAAATTTTGGGGACATGGTCCCCAAGGTTCAACCCTATGGAAGTGGCAGCTTCTCAGAAATGGTTGACACCTTTGCCCAACCTGGCTCTGGTGATATAGCTAACACGGGGTATCTGCCAAGTTATAATCCGAGCAGTGATGGAGGAATCGAAAGGGGTCCAATAAATAATGAGCAATCACAGGTAGAAGGTTCAGCTGTTCAAGAGGGAGACCAAGAATCAGCACCTAGTGAAAATAGAAGAAAGCGAGAGCTTCAATATAAAAAGAATGCTGAGGGGCATTTGATTAAAGATTCTTCTGGAAAGAGCTCTGATGGTATGAAAGAACAAGATGAAAAGAAATCAAAAGTAGAACAAGATAGTAGCCCACCAGTGCATGGTAAGCAATCCGTGAAGCAAAGTAAAGATAACTCTCAAAGTGGAGAGACTCCTAAAGAAAATTTTGTTCATGTGAGAGCCCGAAGAGGCCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGCGAGCGAATGAGGGTGCTTCAAGAACTTGTTCCCGGATGCAACAAGATAACCGGCAAAGCAGTAATGCTTGATGAGATTATAAACTATGTGCAATCATTGCAACAGCAAGTTGAGTTTTTGTCCATGAAACTTGCCACTGTGAACCCAGAACTGAATATTGAGCTAGAGCGGATCCTCTCCAAAGATATTCTCCAATCACGCATTGGACATGGACCTATTGGTAGATGTGTTCCTGGTATCAGCTGCTCTCAACCATTCCCCACAGCAAGTTTCCAAGGAACGCTAATGAGCATGCCCAGCACTTCAACTCAACTCCCTCCTTTGCCCCAGACTGTTATAGACCATGAGTTCCGAAGCTTATACGGAATGAGCTATGATTCCAGCACAGCTCTTGACAATATGGGACCCAATGGACGGTTGAAACCAGAGTTATAG 1269 0.4334 MSDPENAMGLQREKRGILNCPSSGLRTSVSEIANNSVSMSEPSNVANPLLASSAWDPLVSLSQVQSFGVPSMVSHSEFANSLYPFVLENQGMSSYSHVVQYISDSNFGDMVPKVQPYGSGSFSEMVDTFAQPGSGDIANTGYLPSYNPSSDGGIERGPINNEQSQVEGSAVQEGDQESAPSENRRKRELQYKKNAEGHLIKDSSGKSSDGMKEQDEKKSKVEQDSSPPVHGKQSVKQSKDNSQSGETPKENFVHVRARRGQATNSHSLAERVRREKISERMRVLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIELERILSKDILQSRIGHGPIGRCVPGISCSQPFPTASFQGTLMSMPSTSTQLPPLPQTVIDHEFRSLYGMSYDSSTALDNMGPNGRLKPEL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2012 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 311 IPR011598 GO:0046983
Dod09g2012 422 MobiDBLite consensus disorder prediction 226 249 - -
Dod09g2012 422 CDD bHLH_AtBPE_like 251 336 - -
Dod09g2012 422 SMART finulus 267 317 IPR011598 GO:0046983
Dod09g2012 422 MobiDBLite consensus disorder prediction 178 225 - -
Dod09g2012 422 MobiDBLite consensus disorder prediction 140 271 - -
Dod09g2012 422 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 422 - -
Dod09g2012 422 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 422 IPR024097 GO:0006355
Dod09g2012 422 Pfam Helix-loop-helix DNA-binding domain 264 312 IPR011598 GO:0046983
Dod09g2012 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 329 IPR036638 GO:0046983
Dod09g2012 422 MobiDBLite consensus disorder prediction 154 177 - -
Dod09g2012 422 Gene3D - 258 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2012 Dod-Chr9 41648177 41652033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2012 46 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 44.909 4.90e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g2012 HLH 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2012 - - gmx:100801930 539.265