Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2001 ATGGGTTTTGATGATATCTCTAACCCACCAGGGCTTCGACTTGGTCTTGGTCTTGGCCTTGGCCTCAAAGATGAGCACTGCAGGCTTAAGAGAAAGGAGGATGATCGACCATGTAATAAGGCGTACCCATCTCTTTCCTTAGGACCACCTGATGATGATGAAGCAAATAATCAACTACCAACAAAGACCGAGTCCGATGAATGTTTCCATCCACAGGCCTCTTCTCCAAGTGCAGTATCTTCATTTTCCAACTCGTCTAGCATCAAGAGGGAGAGAGATCAAGAATTGGAGGTCGAGGTGGAGAAGATTCCATCATCCAGGGTTGTTGATGTCGACGAAAATGGTAACGCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCCTCAGTCTTAGAGGATAGCTTCAAAGAGCATTCCACTCTCAATCCGAAGCAAAAGCAAGAGTTGGCGAGGAAGCTGAATCTGCGGGCGAGACAAGTTGAGGTGTGGTTTCAGAATCGGCGAGCCAGGACAAAACTGAAACAGACCGAATTGGACTGTGAGGTACTGAAGAAGTGCTGTGAAACTCTGACAGAGGAGAACAAGAGGCTGCAAAAGGAGCTGCAAGAGCTTAAATCAATAATGAAAACAGCACCGGGAACCTTGTACGTGCAGCTTCCAGTAGCCAGCCTTACGATATGCCCTTCTTGTGAGAAAATTAGCGGTGGGGACAGCAATGGACCCTCTCCCAAGACGGCGTTGCTTATTGGCTCAAAAGTCCATCCACAGTACTTCTATAAAACCAACTATCCATTCACCCAATCATCTGCAGCTTGCTAG 819 0.4713 MGFDDISNPPGLRLGLGLGLGLKDEHCRLKRKEDDRPCNKAYPSLSLGPPDDDEANNQLPTKTESDECFHPQASSPSAVSSFSNSSSIKRERDQELEVEVEKIPSSRVVDVDENGNARKKLRLTKEQSSVLEDSFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTELDCEVLKKCCETLTEENKRLQKELQELKSIMKTAPGTLYVQLPVASLTICPSCEKISGGDSNGPSPKTALLIGSKVHPQYFYKTNYPFTQSSAAC* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2001 272 SMART HOX_1 116 178 IPR001356 GO:0003677
Dod09g2001 272 Coils Coil 173 210 - -
Dod09g2001 272 PANTHER - 8 271 - -
Dod09g2001 272 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Dod09g2001 272 CDD homeodomain 118 175 IPR001356 GO:0003677
Dod09g2001 272 Pfam Homeodomain 118 172 IPR001356 GO:0003677
Dod09g2001 272 Pfam Homeobox associated leucine zipper 174 208 IPR003106 GO:0006355|GO:0043565
Dod09g2001 272 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 8 271 - -
Dod09g2001 272 SMART halz 174 218 IPR003106 GO:0006355|GO:0043565
Dod09g2001 272 SUPERFAMILY Homeodomain-like 111 175 IPR009057 -
Dod09g2001 272 MobiDBLite consensus disorder prediction 61 87 - -
Dod09g2001 272 MobiDBLite consensus disorder prediction 29 99 - -
Dod09g2001 272 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Dod09g2001 272 Gene3D - 111 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2001 Dod-Chr9 41501519 41504053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2001 1 272 Homeobox Transcription Factor Family AT2G22800 48.973 1.51e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod09g2001 Homeodomain 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2001 K09338 - gmx:100807072 323.553