LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g2000	ATGGAGGATTACACTAACAACCACATGAGTGAAAGCACCGGTACCGGTCCAAGTCCAAGGGCGAGTTTCTTGTACACCTCGGCTGGTGGTTCAAGCGCAGGGAACAACCACCACCATCATCATCAGCTTCCCATTAACACCTTTCATCTTCAATCAGCTGGTGGATCCGATCATCACCGTTTTCAATCCGATCATCAGGTGCCACACCCTGAAGTGAAAACCGAATCCAACAACAACCCGCAGCTCCACACTCAGATTTTCCACTATCCTAATTTGATGAGAGGGAATCTTCACCACACGCTGCATCCGAGTCAGCACCAACACCAAGAATCTAACGAAGTTGAAGCCATAAAAGCCAAAATCATTGCTCATCCTCACTACTCTAATCTGTTGGAAGCTTACATGGATTGCCAAAAGGTGGGTGCTCCGCAGGAAGTGGTGGCGCGTTTGACCGCCGCGCGGCAGGATTTTGAGGCACGGCAGCGATCTTCGGTTAGTTCCATGGAAACATGCAAGGACCCAGAGCTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATCGGGAGGAATTGACAAGGCCTATACAAGAGGCGATGGATTTCATGCGCAGGATAGAAACTCAGCTGAATATGCTTTGCAATGGACCCGTGCGCATCTTCTCTGCAGATGATAAATGTGAAGGCGTTGGTTCATCGGAAGAGGATCAAGAAAATAGTGGTGGGGAATCAGAACTGCCAGAGATTGATCCCCGAGCAGAAGACCGTGAACTCAAGAACCACTTGCTCAGGAAGTACAGTGGATACTTAAGCAGCCTTAAGCAAGAACTATCCAAGAAAAAGAAGAAAGGAAAGCTGCCTAAAGATGCAAGGCAAAAGCTACTTAACTGGTGGGAATTGCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAGAAGCAAATTAATAACTGGTTCATAAATCAAAGGAAGCGCCACTGGAAGCCATCTGAAGACATGCAATTTATGGTGATGGATGGCCTGCATCCACAGAACGCATCTTTCTATATGGATGGCCATTATATGACTGATGGACATTATCGTTTAGCGCCATAA	1134	0.4683	MEDYTNNHMSESTGTGPSPRASFLYTSAGGSSAGNNHHHHHQLPINTFHLQSAGGSDHHRFQSDHQVPHPEVKTESNNNPQLHTQIFHYPNLMRGNLHHTLHPSQHQHQESNEVEAIKAKIIAHPHYSNLLEAYMDCQKVGAPQEVVARLTAARQDFEARQRSSVSSMETCKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSADDKCEGVGSSEEDQENSGGESELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNASFYMDGHYMTDGHYRLAP*	378

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g2000	377	MobiDBLite	consensus disorder prediction	7	57	-	-
	Dod09g2000	377	Pfam	KNOX2 domain	170	216	IPR005541	GO:0003677\|GO:0005634
	Dod09g2000	377	Pfam	ELK domain	259	280	IPR005539	GO:0003677
	Dod09g2000	377	CDD	homeodomain	291	343	IPR001356	GO:0003677
	Dod09g2000	377	ProSitePatterns	'Homeobox' domain signature.	317	340	IPR017970	GO:0000981\|GO:0006355
	Dod09g2000	377	SMART	ELK_2	259	280	IPR005539	GO:0003677
	Dod09g2000	377	MobiDBLite	consensus disorder prediction	227	254	-	-
	Dod09g2000	377	Gene3D	-	284	346	-	-
	Dod09g2000	377	MobiDBLite	consensus disorder prediction	1	77	-	-
	Dod09g2000	377	SMART	KNOX1_2	115	159	IPR005540	GO:0003677\|GO:0005634
	Dod09g2000	377	Pfam	Homeobox KN domain	299	338	IPR008422	GO:0003677\|GO:0006355
	Dod09g2000	377	Pfam	KNOX1 domain	116	157	IPR005540	GO:0003677\|GO:0005634
	Dod09g2000	377	SMART	HOX_1	281	346	IPR001356	GO:0003677
	Dod09g2000	377	PANTHER	HOMEOBOX PROTEIN KNOTTED-1-LIKE 1	1	369	-	-
	Dod09g2000	377	ProSiteProfiles	'Homeobox' domain profile.	279	342	IPR001356	GO:0003677
	Dod09g2000	377	ProSiteProfiles	ELK domain profile.	259	279	IPR005539	GO:0003677
	Dod09g2000	377	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	1	369	-	-
	Dod09g2000	377	SUPERFAMILY	Homeodomain-like	280	354	IPR009057	-
	Dod09g2000	377	SMART	KNOX2_2	166	217	IPR005541	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g2000	Dod-Chr9	41470741	41476374	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g2000	61	377	Homeobox Transcription Factor Family	AT4G08150	72.000	4.39e-156	443

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Dod09g2000		KNOX2	4e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g2000	-		-	gmx:100807602	595.119