Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1997 ATGCTCCAAAACCTTCAAATTCCTCACTGGGACATACCTCAATCCGAGGGAGGAGGAGGAGCACCCTCCCCATTCTCCATCAACGCCATTGATACTCCTCCCTCACTCGCCGAAGACCACGACGCGCCCCCTGGCCTCCACGTGTTCTCCACCGACCACTTCCGAATGTTCCATTACAAGATCCGCAGCTGTCCACGTGTCAGGTCCCACGACTGGACGGAGTGCCCCTACGCCCACCCCGCCGAGAAGGCCCGCCGCAGAGACCCCCGCAAGTACCACTACTCCGGCACTGCATGCCCCGACTTCCGCAAAGGCCATTGCCGCAAAGGCGACTCCTGCGAGTTCGCTCACGGCGTCTTCGAGTGCTGGCTCCACCCTTCCCGCTACAGGACACAGCTCTGCAAGGACGGAACCTCTTGCCGCCGCCGCGTCTGCTTCTTCGCTCACGCGCCGGACCAGCTGCGCGTGCTCGCTCCATCCTCGGCCGAGTCAAATGCTTCTTCGCATGTTTCGTCGCCTACTTCGGTGCTTAATTACTCCTCTTGTTCGTATCTTTCTGAGTCGCCGCCCTCCTCGCCTGGGGAGGCGCGTTACGGCGTCGCTCCGTTTAATACGGCTTGCGGCGTGCGTGAGTTGGTGAGCTCAATGCGCAACGTTCAGCTTGATGAGGTGGGCTCGGGTTCGGCCCATACGGGCTGCGTGTTTGGGTCCCCTCGTGGGCCGAGTGTGCGGCCCAGGCTTTTGAGGGTTCCTTATGCAGAGGAGCCTGCCATGGAGAGGGTGGAGTCTGGGAGGGATATTAGGGCGAGAATGTACGCGAAGCTGAGTAAGGAGAACTCGATTAATGGGAGAATCGAGGTGGGGTTCTCAGCACCGATTCCTGATATTGGATGGGTCTCCGAACTGGTGAAGTGA 915 0.6011 MLQNLQIPHWDIPQSEGGGGAPSPFSINAIDTPPSLAEDHDAPPGLHVFSTDHFRMFHYKIRSCPRVRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPDFRKGHCRKGDSCEFAHGVFECWLHPSRYRTQLCKDGTSCRRRVCFFAHAPDQLRVLAPSSAESNASSHVSSPTSVLNYSSCSYLSESPPSSPGEARYGVAPFNTACGVRELVSSMRNVQLDEVGSGSAHTGCVFGSPRGPSVRPRLLRVPYAEEPAMERVESGRDIRARMYAKLSKENSINGRIEVGFSAPIPDIGWVSELVK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1997 304 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 40 304 - -
Dod09g1997 304 Gene3D - 92 157 - -
Dod09g1997 304 ProSiteProfiles Zinc finger C3H1-type profile. 94 120 IPR000571 GO:0046872
Dod09g1997 304 SMART c3hfinal6 128 151 IPR000571 GO:0046872
Dod09g1997 304 SMART c3hfinal6 93 119 IPR000571 GO:0046872
Dod09g1997 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 118 IPR000571 GO:0046872
Dod09g1997 304 MobiDBLite consensus disorder prediction 1 27 - -
Dod09g1997 304 PANTHER UNKEMPT FAMILY MEMBER 40 304 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1997 Dod-Chr9 41421823 41423316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1997 48 202 C2H2 Transcription Factor Family AT5G12850 58.065 1.43e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod09g1997 zf-CCCH 6.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1997 - K23048 adu:107461217 391.734