Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1968 ATGTCTGGAACAAGCTCTGTCCCTGAAATGAAGGGAATCAGAGTGAAAGAAGAAGAAGTTACGGTAGCAGCATGTGCAGCCGGTTCATTATCAGCATCATCTTCTTCTTCTTCACCACAGCCCATGGAAGGGCTTCACGAGGTGGGTCCACCCCCATTCCTCACCAAGACCTTCGAAGTGGTGGAAGATCCCTCCACCGACCCCATTGTTTCATGGAGCAGAGCCCGCAACAGCTTCATCGTCTGGGACTCCCACAAATTCTCTACCACAATCCTGCCTCGTTACTTCAAGCACAACAACTTCTCGAGCTTCGTTCGACAACTCAACACATATGGGTTTAGGAAAATTGATCCAGATCGATGGGAATTTGCAAACGAAGGGTTTTTGGCAGGGCAGAGGCACTTGTTGAAGACCATCAAGAGAAGAAGGAACGTGTCACAGTCACAAGGGATGATACAAAACGGAGGAGGAGGAGGAGGGGCGTGTGTTGAATTGGGGGAGTATGGTTTGGAAGGTGATCTTGAAAGGTTGAGGAGAGACAGGACAGTGTTAATGGGGGAGATCGTGAAGCTGAGGCAACAACAGCACAGCTCGAGGGAGCAACTGTGTTCCATGGAAGCAAGATTGCAAACCACGGAGAAGAAACAGCAACAGATAATGACCTTCCTGGCCAAGGCACTCAGCAACCAATCCTTCATTCAACAGTTCGCTCAAGAGGAATTCCCACAACAACAGAGAATTGCCTGGCGTTGA 753 0.494 MSGTSSVPEMKGIRVKEEEVTVAACAAGSLSASSSSSSPQPMEGLHEVGPPPFLTKTFEVVEDPSTDPIVSWSRARNSFIVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLAGQRHLLKTIKRRRNVSQSQGMIQNGGGGGGACVELGEYGLEGDLERLRRDRTVLMGEIVKLRQQQHSSREQLCSMEARLQTTEKKQQQIMTFLAKALSNQSFIQQFAQEEFPQQQRIAWR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1968 250 Pfam HSF-type DNA-binding 53 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod09g1968 250 Gene3D - 46 143 IPR036388 -
Dod09g1968 250 Coils Coil 174 194 - -
Dod09g1968 250 ProSitePatterns HSF-type DNA-binding domain signature. 92 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod09g1968 250 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 31 239 - -
Dod09g1968 250 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 239 IPR027725 -
Dod09g1968 250 SUPERFAMILY "Winged helix" DNA-binding domain 49 142 IPR036390 -
Dod09g1968 250 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod09g1968 250 PRINTS Heat shock factor (HSF) domain signature 53 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod09g1968 250 PRINTS Heat shock factor (HSF) domain signature 104 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod09g1968 250 SMART hsfneu3 49 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1968 Dod-Chr9 41160015 41160901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1968 39 237 HSF AT2G26150 71.357 3.04e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dod09g1968 HSF_DNA-bind 2.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1968 K09419 - gmx:100794605 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1892 08 45007165 45010681 Dod09g1968 09 41160015 41160901 PCT