Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1959 ATGAAACCCACAGTAAGGAACATATTTCCGTGGACGCTGGACATGGCTGTGTCACCCTCAGCACGACGTCGTAGCTTTGTGGGCGAGTCTGCAATAATAGGGAAAGTGAGGGGTAAAACCGACCAAATGTTTGCAATCATGGCTGGGATAGCACCAGAAGGATCACAATTTGATGCTCGTCAATTCGATGCTAAGATGAATGAGTTACTGGGAACTGACGGACAGGAGTTTTTCACTTCTTATGATGAAGTTTATGACAGCTTTGATTCTATGGGATTGCAGGAGAACCTTCTGAGGGGTATTTATGCATATGGTTTTGAGAAGCCCTCTGCAATTCAACAAAGGGGGATTGTTCCTTTCATCAAGGGACTTGATGTAATTCAGCAAGCACAATCTGGAACTGGAAAAACTGCTACGTTTTGCTCCGGAATTTTGCAACAGCTTGATTACAGCTTAGTTGAATGCCAGGCTCTGGTTCTTGCTCCCACTCGTGAACTTGCACAACAGATTGAGAAGGTCATGCGAGCACTAGGTGACTATCTTGGTGTCAAGGTTCATGCTTGTGTGGGTGGGACCAGTGTCCGTGAAGATCAACGCATCCTCTCAAGTGGGGTCCATGTTGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTACGTAGACAATCTCTGCGGCCTGATCACATTAGAATGTTTGTCTTGGATGAGGCGGATGAGATGCTCTCTCGAGGTTTCAAGGACCAGATCTATGATATTTTTCAGCTTCTGCCACCAAAGATTCAGGTTGGCCTTTTCTCTGCCACAATGCCTCCTGAAGCCTTGGAGATCACTAGGAAGTTCATGAATAAACCTGTGAGGATTCTTGTAAAACGTGATGAGCTCACCTTGGAGGGTATCAAGCAATTCTTTGTCAATGTTGAGAAGGAGGAATGGAAGCTTGAGACCCTTTGTGATCTTTATGAAACTTTGGCCATTACCCAAAGTGTTATCTTTGTGAACACCAGACGTAAGGTAGATTGGTTAACAGACAAGATGCGGAGTCGTGATCACACAGTTTCAGCCACCCATGGAGATATGGACCAGAATACAAGGGATATCATCATGAGGGAATTCCGTTCTGGGTCCTCCCGGGTTCTTATTACCACAGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTCTCACTTGTGATTAATTATGATCTGCCCACTCAGCCAGAGAACTATCTTCATCGAATTGGTCGTGGTGGTCGGTTTGGAAGAAAGGGTGTTGCTATCAATTTTGTTACCAGGGATGATGAAAGGATGCTGCTTGACATCCAAAAGTTTTATAATGTGATGATTGAGGAGCTGCCAGCCAATGTTGCTGATCTCCTTTGA 1380 0.4522 MKPTVRNIFPWTLDMAVSPSARRRSFVGESAIIGKVRGKTDQMFAIMAGIAPEGSQFDARQFDAKMNELLGTDGQEFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIRMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGLFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFFVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRGGRFGRKGVAINFVTRDDERMLLDIQKFYNVMIEELPANVADLL* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1959 459 Gene3D - 295 459 IPR027417 -
Dod09g1959 459 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Dod09g1959 459 Pfam DEAD/DEAH box helicase 111 272 IPR011545 GO:0003676|GO:0005524
Dod09g1959 459 Pfam Helicase conserved C-terminal domain 312 420 IPR001650 -
Dod09g1959 459 PANTHER - 52 452 - -
Dod09g1959 459 SMART ultradead3 105 302 IPR014001 -
Dod09g1959 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 440 IPR027417 -
Dod09g1959 459 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 459 IPR001650 -
Dod09g1959 459 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 287 IPR014001 -
Dod09g1959 459 CDD DEADc_EIF4A 91 288 - -
Dod09g1959 459 Gene3D - 76 294 IPR027417 -
Dod09g1959 459 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Dod09g1959 459 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 452 - -
Dod09g1959 459 SMART helicmild6 339 420 IPR001650 -
Dod09g1959 459 CDD SF2_C_DEAD 299 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1959 Dod-Chr9 41111446 41114957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1959 47 459 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1959 K03257 - sind:105164658 781.171