Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1941 ATGGAGGGAGGTGATGCGTACAACCCACGGACGGTGGAGGAAGTATTCCGAGATTTCAAGGGCCGCAGAGCTGCCATGATTAAGGCCCTCACCACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAACATTGGGAAGTCAATCTGCCTGCTGAAGAGGTTCCTCCAGAGCTTCCTGAGCCTGCATTGGGTATTAACTTTGCCAGGGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCCGTCCACAGTGATGCATGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGACGCGACTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTTCAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAATTCTAAGAAAGGATCTGAATCTCAAGTGAAATACTCAAAAGCAACGCCACCAAAAGAAGGCAATGAGGATGGTTTGGAAGAGGAAGATGAGGAGGAGCATGGAGAGACTCTGTGTGGGGCATGTGGAGAGAACTATGCGCCTGATGAGTTCTGGATATGTTGTGACATATGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCGAGGGCTGAGCATATCAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGA 762 0.4541 MEGGDAYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFYQQCDPEKENLCLYGFPSEHWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRTRLFNMINDLPTIFEVVSGMAKKQGKEKSSVSNHSSNKSKSNSKKGSESQVKYSKATPPKEGNEDGLEEEDEEEHGETLCGACGENYAPDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1941 253 Pfam PHD-finger 200 249 IPR019787 -
Dod09g1941 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Dod09g1941 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Dod09g1941 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Dod09g1941 253 MobiDBLite consensus disorder prediction 150 176 - -
Dod09g1941 253 PANTHER CPG BINDING PROTEIN 3 253 IPR045104 GO:0006355|GO:0042393
Dod09g1941 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 253 - -
Dod09g1941 253 CDD PHD_AL_plant 199 249 IPR044104 -
Dod09g1941 253 SMART PHD_3 199 247 IPR001965 -
Dod09g1941 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Dod09g1941 253 MobiDBLite consensus disorder prediction 145 192 - -
Dod09g1941 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1941 Dod-Chr9 40962021 40969894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1941 1 252 Alfin-like Transcription Factor Family AT3G42790 76.680 1.85e-127 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dod09g1941 Alfin 5.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1941 - - dzi:111285222 444.506