Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1911 ATGGTGCATTGTTGTCTGAATTGCAAAGCCCAGAGCAACGCAACTATAAGGATGTGGACGACTAAATTGAAGACGTTACATAAGCGCATGTCTAATGAACTTGCAAAAGTTTTATATTGCCTTGAAGATCTTGGACTCCTATGTGCTTATGAGGCTGTTAAAATATGGCACGAGAATTTCTCCAAAGTTGAAGGAGAGTGTGAAGTTTACCGAAAAGCTTATCTGCACTGTAAAGTTTTCATTGATGAAGTAATACAAACAATTCAAGAATCTCTTCATCTTGATGATAGCAAGATTCTGGAGGTTCAGTTTGATTTTTCAAAGGCAGTAAACTTGGGATATTTATCTCCGAAATTACTTGAACTTATAAAACTCATCCAGTCCTTTGGAGACTCATGCAAGGTATTGTGCCTCGTTTTTGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTCACAGTTTCCTATTTAACTGGAAACAGTACATCAGTTGATGCGCTGACTCCTAAGAGGCAGAAAGAGATATTGGATTCTTTCCGTTCTGGAAAGGTCAATATATTATTTACTACGGACGTCATTGAGGAAGGAATTCATGTGCCAAACTGCTCTTGTGTTATACGTTTTGACCTACCTAAGACAGTTCGCAGTTATGTCCAATCTCGGGGAAGATCTAGGCAAGCTAACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACATGAATCAAAGAAATCAACTTTTTGACATCATCAGGAGTGAGCGATCAATGACTGAAGCAGCTATTTATAAAGAACACGATGCTTCTAGTTTAAGGGTGATTACACAAGGGAAAACAGATGCATACTATGTGGAGTCTACTGGAGCATCAGTGACTTTGGACTCTAGTGTTAGCCTTTTAAATCGATATTGTGAGAAGTTACCATGTGATGAGTACTCCCGTGCAAAGCCCACTTTTGAGTTCCTACCTATGGAAGGGTGTTACAAGTGTACATTAACATTACCGCCTAATGCAGCTTTCCAAACAATAGTTGGTCCCTCAGGAAAAGATGTTCGTTTGGCAAGGCATCTTGTTTGCTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGATCATCTTGTCCCATTCACAGAAGAGCCTTCAGAGGCTGAACTTAGAGTGAAAAACAAAGGATCAAGTTCAGGTGCAGGAACCACAAAGAGAAAGGAGTTACATGGCACAGCCAGCATTCACGCATTATGTGGTACATTGGAAGACAAGCTTGACGGAGCCAAATTTCATGCCTATAGTTTTGATTTCACATGTAATATTGTCAGTGAAATTTACTCAGGATTTGTTCTCCTGATTGAGTCAAAGCTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATCTCAAAATTTGTGAAGGCTTCCATATCTTCCTGTGGGCAAGTTAATTTGAATGCTGAACAGATGATGAATGCAAAACGCTTTCATGAGCTCTTTTTCAATGGTTTGTTTGGGAGATTGGTTCTTTGGTCCAAGTCAATAAAAGGACAAAGGGAGTTTTTACTTCAGGAAGATACAGCATCACTGTGGAGCCCAAAAAACTTTTATCTGCTTCTGCCACTTGAGCAATTGAATTATAGTAAGGGGTCCATGAAAATAAATTGGTCTGCAATAAATTCTTGTGCTTCTGCTGTTGATTTTTTAAGGAAGAAGTTTTCATTGGCTGCTGGAGATTGTGATGATGACAGAAAAATCACATCACCTTGTCCTTGTGATACCGATTCTTCACAGGTGGAATGTGAGGGCACAAATAAGATTCATTTTGCTAATTGTGGGGTTGATGTTAATAATATAAAGAATAGGGTAGTTTTGGCTACTCACACCGGGAGGATATACTGTATTCTCGAAGCCGACAATAACCTATCTGCCGAAAGTCCCTTCGATGGAAACAGTGAAAAGTCTCCCGGGGAACACATTACCTTCTCTGGTTACTACAAGAAAAGGTATGGGATTACACTGAGACATCCGGGACAGCCTTTGTTACGTTTGAAGCAAAGTCACAATGCTCACAATCTTCTTTTGAATTTCCATGAGGAAGATGATAAGGAAAAGTCATCACAAATTGACCCAGTAAACACAAAAATGCCTGCAAATGTTCACATTCCACCTGAGCTTCTATGTGTTCTTGATGTTAAAAGAGATGTTTTGAAGTCGATGTACTTGCTACCATCATTGATGCATCATCTTGAATGCCTCATGTTGTCCAGTCAGCTTAGAGAAGAGATAGATGGTCAGACTAGCAATTTCAACATACCTAGCTCTCTGATTCTAGAAGCATTGACAACTTTAAGATGTTGTGAAAAATTTTCAATGGAACGTCTTGAGTTGCTTGGAGATTCTGTTCTGAAATATGCTGTGAGCTGTCACCTTTTTCTTAAGTATCCTAAGAAACATGAAGGACTATTATCTGCCAGACGGTCATGGGCTGTTTGTAATTCAACCCTGCATAAACTGGGAACAGATCGCAAATTACAGGGATATATCCGAGACTCTGCGTTTGAACCACGCCGTTGGGTTGCCCCAGGACAGCGCTCTATACATGCTGTTCATTGCGAATGTGGGTTGGAATCCCTAGAAGTGCCTGTTGATGGAAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTCTGTGATAGGGGTCACCGCTGGATGTGTTCAAAGACAATTTCTGATTGTGTTGAAGCTCTAATAGGAGCATACTATGTGGGTGGTGGACTGATTGCTTCACTACATGTGATGAAGTGGCTTGGGATTGATGCTGAACTAGAGCCATCCTTGATTGATGAAGCCATCACTGCTGCATCTCTCCATACATATGTACCAAAAGTAAAAGAGATTGCAAGCCTTGAGAAGAAAATTAAGTATGAATTTTCTGTTAAGGGTCTCTTATTGGAGGCAATCACACATTTGTCAGAGGCAGAACTGGGGATTGGCTGCTGTTACGAGAGACTGGAATTTCTTGGTGACTCCGTGTTAGATCTTCTCATAACATGGCATCTGTATAAGAGCTACCAAGATATTGATCCAGGGGAGTTGACTGACTTGCGTTCTGCTTCTGTCAATAATGATAGTTTTGCTCAAGTTGCTGTTAGAAGAGACCTTTATCTGCACCTTCAGCATAGCTCAGGAATATTGCTAGGCCAGATATTGGAATATGTGACAATAATTTCTGAATCAGAGAGCAACACCAGATCACGGCCAGGCATTAAAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATACCAGGCTCAATCTTGACGAAGTGTGGAAAGTTTTTAATCCTCTGTTATCTCCCATTGTTACTCCTGACAAACTTGAATTGCCTCCATTGCGTGAACTAATTGAATTATGTGACTCTCTTGGGTATTTTATTAAAGAAAATTGTAAAAAGAAGGGAACTATGGTGCATGCTGAGCTTAGTGTACAGCTGCCAAATGCCCTCTTGGTTAAAGAGGGAAAGGGGCTAAATAAAAAAATAGCAAAAGGAGAAGCCGCATTTCATTTGTTGAAGGAACTTGAGAAGAGGGGAATTTCATATGGTGGTAGCATGTCGAAGAGAAAAAGAGAGAATCCTGACTATCTCCGTGATTCATCTCATCTCGAAACAGATGTTAGTCATTGCCAGAGTCTAACAAATGAACATTTGTCAAAGCCAGCACATAAAAGGCCAAAAGTGGATGAAATTAACATAACCGGAAGTGCATCTGCCATTTTGTTGCCTCACAAGGACTCTTCCAGGGAAGTCTCTGATTCTACTGCTTCCATTCCAGTTCTGGCATCTATTAATATGAAGAAGGGAGGACCCCGAACCACACTATATGAACTGTGCAAGAAATTACAGTGGCCATTGCCTGCATTTGATTCAACAGAATATAAAGATAGAACCCTTTTCGAATCCTGCGAAGGCCTGGAAGGAAGCAAGGGACTTAATTGTTTTGTGTCAAAAATTACCTTGTGCATACCAAATGATGGTAATATAGAATGCAAAGGAGAACCTAGAGCTGATAAGAAGAGCTCATTTGACTCTGCCGCAGTTCAAATGCTTAATGAGCTGCAACGACTGGGAAAACTTAAGATTGGTGGTGACCCCTAA 4221 0.4023 MVHCCLNCKAQSNATIRMWTTKLKTLHKRMSNELAKVLYCLEDLGLLCAYEAVKIWHENFSKVEGECEVYRKAYLHCKVFIDEVIQTIQESLHLDDSKILEVQFDFSKAVNLGYLSPKLLELIKLIQSFGDSCKVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNSTSVDALTPKRQKEILDSFRSGKVNILFTTDVIEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFIVMLERGNMNQRNQLFDIIRSERSMTEAAIYKEHDASSLRVITQGKTDAYYVESTGASVTLDSSVSLLNRYCEKLPCDEYSRAKPTFEFLPMEGCYKCTLTLPPNAAFQTIVGPSGKDVRLARHLVCLEACKKLHQMGALNDHLVPFTEEPSEAELRVKNKGSSSGAGTTKRKELHGTASIHALCGTLEDKLDGAKFHAYSFDFTCNIVSEIYSGFVLLIESKLDDDVGNIELDLYLISKFVKASISSCGQVNLNAEQMMNAKRFHELFFNGLFGRLVLWSKSIKGQREFLLQEDTASLWSPKNFYLLLPLEQLNYSKGSMKINWSAINSCASAVDFLRKKFSLAAGDCDDDRKITSPCPCDTDSSQVECEGTNKIHFANCGVDVNNIKNRVVLATHTGRIYCILEADNNLSAESPFDGNSEKSPGEHITFSGYYKKRYGITLRHPGQPLLRLKQSHNAHNLLLNFHEEDDKEKSSQIDPVNTKMPANVHIPPELLCVLDVKRDVLKSMYLLPSLMHHLECLMLSSQLREEIDGQTSNFNIPSSLILEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGLLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHAVHCECGLESLEVPVDGKFHTEDPKVVVGKFCDRGHRWMCSKTISDCVEALIGAYYVGGGLIASLHVMKWLGIDAELEPSLIDEAITAASLHTYVPKVKEIASLEKKIKYEFSVKGLLLEAITHLSEAELGIGCCYERLEFLGDSVLDLLITWHLYKSYQDIDPGELTDLRSASVNNDSFAQVAVRRDLYLHLQHSSGILLGQILEYVTIISESESNTRSRPGIKAPKALGDLVESIAGAILIDTRLNLDEVWKVFNPLLSPIVTPDKLELPPLRELIELCDSLGYFIKENCKKKGTMVHAELSVQLPNALLVKEGKGLNKKIAKGEAAFHLLKELEKRGISYGGSMSKRKRENPDYLRDSSHLETDVSHCQSLTNEHLSKPAHKRPKVDEINITGSASAILLPHKDSSREVSDSTASIPVLASINMKKGGPRTTLYELCKKLQWPLPAFDSTEYKDRTLFESCEGLEGSKGLNCFVSKITLCIPNDGNIECKGEPRADKKSSFDSAAVQMLNELQRLGKLKIGGDP* 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1911 1406 Pfam Helicase conserved C-terminal domain 136 235 IPR001650 -
Dod09g1911 1406 ProSiteProfiles Ribonuclease III family domain profile. 767 939 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 SMART PAZ_2_a_3 592 766 IPR003100 GO:0005515
Dod09g1911 1406 CDD RIBOc 786 950 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 SUPERFAMILY RNase III domain-like 780 957 IPR036389 GO:0004525|GO:0006396
Dod09g1911 1406 CDD RIBOc 996 1146 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 Gene3D Dicer dimerisation domain 301 399 IPR038248 -
Dod09g1911 1406 PANTHER DICER-RELATED 16 1399 - -
Dod09g1911 1406 ProSiteProfiles Ribonuclease III family domain profile. 980 1125 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 252 IPR027417 -
Dod09g1911 1406 Gene3D - 111 273 IPR027417 -
Dod09g1911 1406 SUPERFAMILY RNase III domain-like 979 1145 IPR036389 GO:0004525|GO:0006396
Dod09g1911 1406 Pfam PAZ domain 628 763 IPR003100 GO:0005515
Dod09g1911 1406 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1194 1217 IPR014720 -
Dod09g1911 1406 Pfam Ribonuclease III domain 1016 1124 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 Pfam Ribonuclease III domain 804 938 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 16 1399 - -
Dod09g1911 1406 SMART riboneu5 786 959 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 SMART riboneu5 995 1148 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 118 279 IPR001650 -
Dod09g1911 1406 Gene3D Ribonuclease III domain 968 1145 IPR036389 GO:0004525|GO:0006396
Dod09g1911 1406 Gene3D Ribonuclease III domain 768 950 IPR036389 GO:0004525|GO:0006396
Dod09g1911 1406 Gene3D paz domain 614 740 - -
Dod09g1911 1406 ProSitePatterns Ribonuclease III family signature. 1016 1024 IPR000999 GO:0004525|GO:0006396
Dod09g1911 1406 Pfam Dicer dimerisation domain 306 392 - -
Dod09g1911 1406 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 306 396 IPR005034 GO:0016891
Dod09g1911 1406 SUPERFAMILY PAZ domain 628 742 IPR036085 GO:0005515
Dod09g1911 1406 Gene3D - 1317 1396 - -
Dod09g1911 1406 CDD SF2_C_dicer 114 246 - -
Dod09g1911 1406 ProSiteProfiles PAZ domain profile. 629 742 IPR003100 GO:0005515
Dod09g1911 1406 SMART helicmild6 148 238 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1911 Dod-Chr9 40685739 40696541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1911 162 235 Eukaryotic Initiation Factors Gene Family AT3G19760 38.667 3.17e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1911 K11592 - gmx:100806831 2061.57