Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1907 ATGGCTGGTGGTGGTGGTGGTGGTGGTGATGGTGCTCGTGCTACTACGCCTGATCACAACCCATCATCATCTTGTGGTGGTGATGGTGATCATGGTAATAACAATAATAAGGTGTACAAGGGTGTGAGGAAGAGAAAGTGGGGGAAATGGGTTTCTGAAATAAGGCTTCCGAATAGCCGTGAGCGCATATGGCTTGGTTCACATGATTCTCCTGAGAAGGCTGCTCGAGCTTTCGATGCTGCACTTTACTGTCTCCGAGGATGTCGCGCCAATTTCAATTTCCCCGACACACCTTTCAACTTGGACGACATCAATGCTGCTGACCAATCCCTCACTGCACAGCAGATTCAACTCATTGCTGCCAGGTTTGCCAACAATCAGGAAGAACAACCCTCATCACAACAAGATCATCATCACGGGGTTGTTGGTGCTAATAATAGTACTAATAATTCTTCACCTAAATCCGACAGCGTGATGAGGGAGAATACTTATACTGCCACCACTGCTTCGTCATCTAATTCTACTACTATGTATGAATGCGATGGGAGGGGGGTGCAGGTGGACCACGGGGACAATAATATTGGTGAAATGGATTGGACATTTTTGAACGATTTGGGTGATTCTAGTACTGTTATTGGCTCTGATCATTATCATGGCCTCTATTCTGATGATTTAGACAAAATGCACTCGGGTGAGTTATCAATGTACTCCACTACTGCTCCTTTTGAGGATAATAGTGTGGACGAAATTGAAGGTGATGATCCTTTTTCTAACCAACCATTCCTTTGGAATTGGTAG 798 0.4511 MAGGGGGGGDGARATTPDHNPSSSCGGDGDHGNNNNKVYKGVRKRKWGKWVSEIRLPNSRERIWLGSHDSPEKAARAFDAALYCLRGCRANFNFPDTPFNLDDINAADQSLTAQQIQLIAARFANNQEEQPSSQQDHHHGVVGANNSTNNSSPKSDSVMRENTYTATTASSSNSTTMYECDGRGVQVDHGDNNIGEMDWTFLNDLGDSSTVIGSDHYHGLYSDDLDKMHSGELSMYSTTAPFEDNSVDEIEGDDPFSNQPFLWNW* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1907 265 MobiDBLite consensus disorder prediction 16 31 - -
Dod09g1907 265 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Dod09g1907 265 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Dod09g1907 265 MobiDBLite consensus disorder prediction 126 159 - -
Dod09g1907 265 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Dod09g1907 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 265 - -
Dod09g1907 265 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Dod09g1907 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 24 265 - -
Dod09g1907 265 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Dod09g1907 265 MobiDBLite consensus disorder prediction 1 39 - -
Dod09g1907 265 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Dod09g1907 265 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Dod09g1907 265 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1907 Dod-Chr9 40639819 40640616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1907 39 132 AP2-EREBP Transcription Factor Family AT1G19210 68.085 1.38e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod09g1907 AP2 4e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1907 09 40639819 40640616 Dod09g1907 09 40639819 40640616 ECH
Dod08g1813 08 42661298 42662678 Dod09g1907 09 40639819 40640616 ECH