Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1898 ATGGTCTGCGAGATGGAGAGCGACTCTATTGAGGACATGGACATTGAAGTCCTCCCTTCTATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAGGATATGTTAGAGGATGTTACAATCATAGGGGAGCCAACTATAGCTGATTTCAAGCGTCTCATGGAACTAACTAACTTTACAGAGAAGGGGTCTTCTCAGTTGGCCTACCTCATGAAACACTGGGAGTATAAGCAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAGCTTGACAACCTTAGCAAGCAAAGGCAAGACGTTGAGCTGAGGAAGTTGGAGATATTGGAGGAGCATCGATTCGAGGGAGATAGATATGGGGGCGACAAACGACCGGTTTCTATATTGGATGATGTTTATGATATATGGCAAGATGTGCCGCGCAGGAAAAGTGATGTTGTGGTTCAAGACAGGAGAATTGAAATTGATGCTGAGTATGGTACTGTTAAATACTGGAAGCAGCGGGCCCTGCATTTGGAAAAACTTCTGGAGGCAAGTATCCAGAGAGAGCAGATACTTGAGGAGAAGTTACAAGAAAGTATAAAGAACATTGAGAGGCAGTCCTCACCTGTGGAAGAACTCTCCCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATACTCCAAAATGCGCCTGTTGTTATTGGCCATCAGGACAAAGAGCTGCGATATCGCTTTATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACGGGATCCGGTGTTAGGGAATCTCAAGAGTTTAAGAGAGAAGTCCTGGAAAAAGGATTGCCTGCAAAAAGGGAAATCACATTTGAGACGGAGCTATTTGGGTCAAAGACATTTTTGATATTTGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACTATTGGAATAAACTACATGGGAATGGACGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATCCGGGAAGAGATTGCAGTTCAGAAAGCGAAGGAAACCGAACTGAATAAAACAATTCACATAACAGAGGAGACAATGCGAGCAAAACAAATGCTAGCAACAATGTCTCATGAGATTAGGTCTCCACTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGGGAACAAAGACAGCTCTTGGATGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAATCAGGAGTTATGAAGTTGGAAGCTACCAAATTCCGGCCAAGAGAGGTGGTAAAGCATGTGCTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGACATGTGGCAGATGATGTACCGATTGAGGTGATTGGTGATGTTTTAAGAATTCGACAAATTCTCACAAATCTGATCAGCAATGCCATCAAGTTTACACATGAAGGCAAAGTTGGTATAAACCTTTATGTTGTGTCAGAGCCAAGTTATGCAATAGCAGATGGCATCCAAAAGATGACAACAGACCGGTCAACCAATTCAGCAAATCGAGTGAAAGAAGAGAAATACCTCTCAACACCTCAGAGTGGCAGTGACCGAAATCTTCTTGATGGTCAAAGACATAATCACCACCCCAGCCAAACCCATGCATTTAGCAATGAATGCATATCACCAGTAAAAAGCGAATGCTCAGCAAGTGGAGACACTGAGGAGCAACCACATCCAACTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATTGGGATACCAGAAAATGCTATACCTACTTTATTTAAAAGGTATATGCAAGTCAGTGCAGACCACACTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCGTCTAACAGTGTCTAGCAAAGAACACCATGGCTCTACCTTCACCTTCATACTCCCTTACAAGGTTTCAATCACTTGTGATAATTCTGATGACGCGGATGAGCTCTCAGATGTGGAGAATGATGATGCTGCTTCTGATGATACAACAGAGGGTTTCTTCCAATTCCAGCCACACACTTTAGGCTCTCTATTCTCTTCTAATGGTTCTAGCAGGACTCAGAAGTTATTGCCTCACAAGATTGGCTACACAAGCTCACATATTTTTAACGGGTTTTCAGAGAGTTCAAACTCATTCCCCTCTCATGATATCATATCAAAAGGGACAAGTTCTGTTGAGTATTCATATTCAGTGGTTGATGTTCCTGAGATGTCTGAATCAGCAAGTTCATCTGGTCACAGCCTAGAGAGAAAGAATGAAAATTTAGTTAGCATAGACAAACAGTGTCAAGATAAGGCCAGTGCTTGGTCCCAGAATGGTAGTGCGGATTCCTCTCAACCTATGGTGGCAACTAGAGAAATGGCTATAGCAACAAAATCAAGCGAACCCCACCAAATAAGTCAGGTTCAAGGGAAGGCAAACACAATTAGCCAATGTGTAACTAGCAGCTGTACATCAGAAGTAACCAAATCCACATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATCAATATCATGGTGACACAATCCATGATGAAGCAGTTAGGTCATAGCATAGATATTGTGAATAATGGAGTCGAAGCAGTACGTGCAGTTCAGCGCTGCGCTTATGACCTGGTTCTGATGGATGTCTGCATGCCAGTTATGAACGGTCTTCAGGCAACAAAACTGATTCGGTCTTTTGAGGAAAAAGGCAACTGGGATGCTGCAAGAAAAGCTGGACTAGAGCAAAATCTACCAGATCTAGCTTATGACTGTTCTGTGCCATCTACAAAGCGGATCCCCATTATTGCGATGACAGCAAACGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCGAATGGTATGGACTCATTTGTGTCAAAACCTGTCACTTTCCAAAAACTGAAAGAGTGTCTTGAACAGTACCTAAGGTGA 3051 0.4254 MVCEMESDSIEDMDIEVLPSMWPEDIGTDVGKQFNIEKPGRDQDMLEDVTIIGEPTIADFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEGDRYGGDKRPVSILDDVYDIWQDVPRRKSDVVVQDRRIEIDAEYGTVKYWKQRALHLEKLLEASIQREQILEEKLQESIKNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQEFKREVLEKGLPAKREITFETELFGSKTFLIFVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKVGINLYVVSEPSYAIADGIQKMTTDRSTNSANRVKEEKYLSTPQSGSDRNLLDGQRHNHHPSQTHAFSNECISPVKSECSASGDTEEQPHPTETTVWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHTRKYGGTGLGLAICKQLVELMGGRLTVSSKEHHGSTFTFILPYKVSITCDNSDDADELSDVENDDAASDDTTEGFFQFQPHTLGSLFSSNGSSRTQKLLPHKIGYTSSHIFNGFSESSNSFPSHDIISKGTSSVEYSYSVVDVPEMSESASSSGHSLERKNENLVSIDKQCQDKASAWSQNGSADSSQPMVATREMAIATKSSEPHQISQVQGKANTISQCVTSSCTSEVTKSTLKPKILLVEDNKINIMVTQSMMKQLGHSIDIVNNGVEAVRAVQRCAYDLVLMDVCMPVMNGLQATKLIRSFEEKGNWDAARKAGLEQNLPDLAYDCSVPSTKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYLR* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1898 1016 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1015 - -
Dod09g1898 1016 Coils Coil 92 119 - -
Dod09g1898 1016 Gene3D - 865 1016 - -
Dod09g1898 1016 Gene3D - 437 682 IPR036890 -
Dod09g1898 1016 MobiDBLite consensus disorder prediction 531 573 - -
Dod09g1898 1016 CDD REC_hyHK_CKI1_RcsC-like 873 1011 - -
Dod09g1898 1016 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Dod09g1898 1016 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 677 IPR003594 -
Dod09g1898 1016 Coils Coil 188 208 - -
Dod09g1898 1016 CDD HATPase_EvgS-ArcB-TorS-like 487 676 - -
Dod09g1898 1016 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 466 676 IPR036890 -
Dod09g1898 1016 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Dod09g1898 1016 Pfam Response regulator receiver domain 873 940 IPR001789 GO:0000160
Dod09g1898 1016 SMART HKATPase_4 482 679 IPR003594 -
Dod09g1898 1016 SUPERFAMILY CheY-like 871 1016 IPR011006 -
Dod09g1898 1016 Gene3D PAS domain 211 348 - -
Dod09g1898 1016 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1015 - -
Dod09g1898 1016 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Dod09g1898 1016 ProSiteProfiles Response regulatory domain profile. 872 1015 IPR001789 GO:0000160
Dod09g1898 1016 Gene3D - 359 436 - -
Dod09g1898 1016 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Dod09g1898 1016 SMART REC_2 871 1011 IPR001789 GO:0000160
Dod09g1898 1016 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Dod09g1898 1016 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Dod09g1898 1016 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Dod09g1898 1016 ProSiteProfiles Histidine kinase domain profile. 378 679 IPR005467 -
Dod09g1898 1016 MobiDBLite consensus disorder prediction 531 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1898 Dod-Chr9 40540143 40547734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1898 1 535 Histidine Kinase Gene Family AT5G10720 69.346 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod09g1898 HATPase_c 1.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1898 - - gmx:100819520 1679.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1898 09 40540143 40547734 Dod09g1898 09 40540143 40547734 ECH