Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1896 ATGGCACAAAGAAGAAAGAAGAGCACCGTGAGGAGAGTGAAAGTCGGAGCCGTACTTGATCTTGAGAATGGAACGGTTGGGAAGATGGGGTTGAGCTGCATCAGAATGTCCCTCTCTGACTTCTATCGCTCTCATTCTCATTACAAAACCAGGCTCCAACTCACCGTCGCAGACTCCCAAAGAGACGTCGTTACTGCCGCTGCTCAAGCTCTAGATCTCATAAAAAATGAGCAAGTGCAAGCTATCATGGGGCCAGTAACAACAATGGAGGCTACCTTTGTGATCAGCCTCGGAGACAAAGCACACGTGCCCATTGTGACCTTTTCAGCAACAAGCCCTTCTCTTTATTCTCTTCAGAGTCCATATTTTTTCCAAATCGCACAAAGCGATTCAACTCAAGTAAAAGCAATCAGTGATCTTGTCCAAGCATTTGGGTGGAAGGAAGTGGTGCCCATTTACGTGGACAACAGTTATGGTCGTGGAGTGATCCCACGCTTAACCGATTCACTTCAACAGGCCTATGTCCGTATTCCTTATCTCAGTGTCATTCCTCTTTCAGCCACGCATGAAGCCATTGTTGCAGAGCTCTATAAGTTGATGACAATGCAAACGAGAGTCTTTGTTGCGCACATGACACCAAGTCTTGGCTCTCGCGTATTCACCATAGCAAAGCAGATTGGGATGATGGACCAAGGTTATGTTTGGATTGTAACTAATGGAATGGCTGATTTCTTCAATTCTTTGGAGTCTTCAGTTATGGAATCTATGGAAGGGGTATTGGGTGTAAGGCCTTATGTTCCAAGAACAAAAGAGCTTGATGAATTTAAGGTTCGGTGGAAAAGGGAATTCCTAAGGGAAAATCCAACACTTGTTGACACAAACTTGAATGATTTTGGAATATGGGCCTATGATGCTACCACTGCATTGGCAATGGCTGTTGAGAAGGTTGACACCACCAACTCTGGCTTCAATGTGATGAGCAACACATCAAGCAAGGTGCCTGATCTTGAAAACTATGGCATTTCACTAAATGGTGAGAAGCTGCGTGAAGCCTTGTCAAACACTAGATTCACAGGCCTGAGTGGCGAGTTCAATGTTTCTGGAGGGCATTTACAGGCATCAACACTTGAGATAGTTAATGTGATTGGTAATGGGGAAAAGAGGATAGGATTTTGGACCCCAGAGCAGGGACTAATTAGAAAGCTGCAGGATACACTTGGTTCAACCATATATTCTACTTCTAAGAGCAATTTGGGTCCAATTATGTGGCCAGGGGACATGTACTCTGTCCCAAAGGGTTGGGAAATTCCCACCAATGGCAACAAGTTGAGAGTAGGGGTTCCAGTGAAAGATGGGGGTGGTTATACTGAATTTGTGAAAATAATTCATGACCCTAGTACCAATTCAACAGATGTCACTGGCTTCTGCATCGATGTCTTCAAAGCTGCGCTAGGAGTGTTGAATTATGCCCTTCCATGTGAATTCATTCCATTTGAACAGCCCAATGCCAATGGTGAGATGGCAGGAACATACGATGAGTTGATCAGCCAAGTTTATTATGGGAACTTTGATGCTGTGGTGGGGGACATAACGATTATTGCAAACAGGTCCAACTATGTTGATTTCACATTGCCGTTCACAGAATCTGGTGTGACTATGGTTGTTCCAGTAAAGGACAACAGGAAGAGGAATGCATGGGCCTTCTTGAAGCCACTGACATGGGACCTTTGGGTAACAATCGCTTGTTCGTTTGTATTCATTGGATTTGTTGTGTGGGTCCTTGAACACCGAATCAATAACCATTTCAGAGGGCCTCCATCTCACCAAATTGGCACAAGCTTGTGGTTTTCCTTCTCAACCATAGTGTTTGCCCATCGGGAGAGAGTGGTGAGTAACTCGGGTAGATTTGTGGTTATCGTGTGGGTTTTCGTTGTTCAGATTCTGGTTCAAAGTTACACCGCGAGCCTCACCTCTCTATTAACGGTTGAACAACTACGGCCAACTATTACAGACGTGCAGCAACTCCTAAAGAATGGGATGAATGTTGGCTTCCTGAGAGGCTCTTTTGTTGAAGGAATGTTGAAGTACATGGGGTTCCAAGATCACCAGCTCAAGGTTTACAATTCTGCAGAAGAATGCAACGAGCTTTTCACAAACGGTAGCATTGCTGCTGCATTTGACGAAGTTCCCTACGTGAAGCACTTTCTTGGAACCTACTGCTCCAAGTATGTCATGGTTGAACCAAGATTTCAAACTGGTGGCTTTGGCTTTGTGTTCCCAAAAGGTTCACCTCTTGTGTCTGACATTTCAAGGGCAATCCTGAATGTGACTCAGGGAGACAAAATGAGAAGAATTGAGAATGCGTGGTTCAATGGGAGCAGTTGTCCAGAGACTAATACACAAGTTTCTTCTAATAGCCTCGGCCTTGAAAGCTTCTGGGGTCTGTTTCTTATTGTGGGTGTTTCTTCTCTATTAGTACTCATGATCTTTTCAATGACATTCCTATATCAGCAGAGACATATCATTTTAAGCCATAATCCCAGCACTTCAATATGGAGACGTATTGGAATCTTGCTAAGTATATTCAATGAGAAAGACTTGAATTCTCACACATTCAAGAAGAGTGGAAAGCAAGGCAGAGTTAGTGAAAGTAGTAGTCCTTCTCATCATCATGGAATAGATGCAGTTGAGACCTCCCCAAGTACACACTGCCCACCAAGCCCGTCTAGTCACACAGAATCAAACCTTTCATTTTATGGAGATCATGGGGTGTTGAGTCCAGATGCAAATGGTTATGCAACTCAGGGTCAAGAGACTCATGAGGACACAGAAATGAAGGTCGTCCATAATGTTACTCCAGACGCTGCCAATGCAAACATCAGGGATACTAGTAACTCTCAAGCGGCATAG 2910 0.4426 MAQRRKKSTVRRVKVGAVLDLENGTVGKMGLSCIRMSLSDFYRSHSHYKTRLQLTVADSQRDVVTAAAQALDLIKNEQVQAIMGPVTTMEATFVISLGDKAHVPIVTFSATSPSLYSLQSPYFFQIAQSDSTQVKAISDLVQAFGWKEVVPIYVDNSYGRGVIPRLTDSLQQAYVRIPYLSVIPLSATHEAIVAELYKLMTMQTRVFVAHMTPSLGSRVFTIAKQIGMMDQGYVWIVTNGMADFFNSLESSVMESMEGVLGVRPYVPRTKELDEFKVRWKREFLRENPTLVDTNLNDFGIWAYDATTALAMAVEKVDTTNSGFNVMSNTSSKVPDLENYGISLNGEKLREALSNTRFTGLSGEFNVSGGHLQASTLEIVNVIGNGEKRIGFWTPEQGLIRKLQDTLGSTIYSTSKSNLGPIMWPGDMYSVPKGWEIPTNGNKLRVGVPVKDGGGYTEFVKIIHDPSTNSTDVTGFCIDVFKAALGVLNYALPCEFIPFEQPNANGEMAGTYDELISQVYYGNFDAVVGDITIIANRSNYVDFTLPFTESGVTMVVPVKDNRKRNAWAFLKPLTWDLWVTIACSFVFIGFVVWVLEHRINNHFRGPPSHQIGTSLWFSFSTIVFAHRERVVSNSGRFVVIVWVFVVQILVQSYTASLTSLLTVEQLRPTITDVQQLLKNGMNVGFLRGSFVEGMLKYMGFQDHQLKVYNSAEECNELFTNGSIAAAFDEVPYVKHFLGTYCSKYVMVEPRFQTGGFGFVFPKGSPLVSDISRAILNVTQGDKMRRIENAWFNGSSCPETNTQVSSNSLGLESFWGLFLIVGVSSLLVLMIFSMTFLYQQRHIILSHNPSTSIWRRIGILLSIFNEKDLNSHTFKKSGKQGRVSESSSPSHHHGIDAVETSPSTHCPPSPSSHTESNLSFYGDHGVLSPDANGYATQGQETHEDTEMKVVHNVTPDAANANIRDTSNSQAA* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1896 969 Pfam Receptor family ligand binding region 33 383 IPR001828 -
Dod09g1896 969 SUPERFAMILY Periplasmic binding protein-like II 420 792 - -
Dod09g1896 969 MobiDBLite consensus disorder prediction 872 920 - -
Dod09g1896 969 Gene3D - 565 705 - -
Dod09g1896 969 MobiDBLite consensus disorder prediction 900 919 - -
Dod09g1896 969 Gene3D - 740 797 - -
Dod09g1896 969 Gene3D - 129 297 - -
Dod09g1896 969 Gene3D - 343 442 - -
Dod09g1896 969 Pfam Bacterial extracellular solute-binding proteins, family 3 469 791 IPR001638 -
Dod09g1896 969 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 887 - -
Dod09g1896 969 Pfam Ligand-gated ion channel 792 821 IPR001320 GO:0015276|GO:0016020
Dod09g1896 969 PANTHER GLUTAMATE RECEPTOR 2.9 13 887 - -
Dod09g1896 969 SMART GluR_14 442 792 IPR001320 GO:0015276|GO:0016020
Dod09g1896 969 MobiDBLite consensus disorder prediction 878 892 - -
Dod09g1896 969 SUPERFAMILY Periplasmic binding protein-like I 13 425 IPR028082 -
Dod09g1896 969 CDD PBP1_GABAb_receptor_plant 14 402 IPR044440 -
Dod09g1896 969 PIRSF IGluLR_plant 1 917 IPR017103 -
Dod09g1896 969 Gene3D - 443 564 - -
Dod09g1896 969 CDD GluR_Plant 441 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1896 Dod-Chr9 40523987 40529626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1896 12 949 Ion Channels AT2G29120 49.894 0.0 916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1896 09 40523987 40529626 Dod09g1896 09 40523987 40529626 ECH