Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1893 ATGAACACCATCAAGTACGATGCAGAGCTTATTATTGTGGGTTTGATCTTGTTGTGCCCTCCATGGATTTTGGTGGGTCATGCACAGAACACGACGACTACAACAAGAAGGGTAAATGTGGGGGTTGTGCTTGATCTTGCTCAAACAGTGGGCAAGATAGGGTTGAGTTGCATCAACATGTCCCTTTCAGATTTCTATGCTGCTCATACTCATTACAACACCAGGCTGGTCCTCAACATAAGGGACTCACAAAATGATGTTGTTACTGCAGCTTCTGCAGGTCTAGACCTCATAAAAAACGAGCAAGTGCAGGCCATCGTGGGGCCAATATCATCAATGCAGGCCAGCTTTGTTGTGAATCTTGGGGAAAAAGCTCATGTGCCCATCATATCATTCACGGCAACAAGCCCTTCCCTAACTTCCCTCGGGAGTTCCTATTTCTTTCGAATTGCACAAAATGACTCGGCTCAAGTGGATGCCATAAGTGATATAATCCAATCCTTTGGATGGAAAGAAGCAGTCCCCATTTACATCGACAATGAGTACGGTCGAGGCATTATACCATTCTTAACCAATGCCCTGCAACAATTCAATATTAGAGTCCCTTATCTTAGTGTCATACCCCCCTCGGCTACAGATGTTCAAATTTCTGATGAGCTTTATAAGTTGATGACAATGCAAACAAGAGTCTTTATTGTGCATGTGCCCGCCAGTCCTGGCTCTAGTCTCTTTACCATTGCAGACCAGATTGGAATGATGAGCCAAGGCTATGTTTGGATCACCACCAATGGTATGAGCAATGTTTTAGGCTCTCTTGATGCCTCGGTTATTGATGCAATGCAGGGTGTGTTGGGTGTCAAGACCTATGTCCCCAAAACAAAGAGGCTAACTGATTTCGAAGCGCGGTGGAAAAGGGAGTTTGTGCAAGCAAATCCAACCATGGTTCATGCAAATCTTAATGTGTTTGGATTATGGGCTTATGATGCCATAACTGCACTAGCAAGTGCGGTTGAGAGGGTTAAGAGCACAAATTTTGGCTTTCAAAGGTCCGATGATTCCACTGGTTTCAGTGATATTGACACTTTAGGTGTCTCTCAAAGTGGTGAGCATTTGCGGGATGCTTTATCAGACACCGCATTTAGAGGCCTAGCTGGAGAGTTTGGCCTTGACAATGGGCAATTGCAAGCTACAACTTTTCAGATAATTAATGTAAATGGTAATGGTGAAAGAGGAATAGGATTTTGGACACCACATGACAGATTAACAAGGAGTCTCACCTTAACAAGTGGAGTCACACTTTCTAGTACTCCTAATAAGAGCAATGGTCCCAATCTAGGACCCATCATATGGCCAGGGGACAGTTACTCTACTCCAAAGGGATGGCAAATTCCTACAAATGGCAAGAAATTGAGGATAGGAGTTCCCGTGATGTCTAGGCCTGAATTTGTGAACGTGGCACTTGATCCTGACACTAACACAACAAAGATCACCGGTTACTGCATTGATGTGTTTGACGCAGTGGTGCAGGCTTTGCCATATGCCCTGCCATACGAACTCATTCCTTTTGCAAAGCCAAATGGGGAGAGCAAGGGGACCTATGATGATTTGATCATGCAAAACTTTGATGCTGTGGTGGGAGACACAACCATTATTGCGAACAGGTCCAACTACGTTGACTTCAGTTTGCCGTATACGGAATCCGGGGTGTCCATGGTGGTGCCAGTGAAAGACAACAGGAAGAAGGGTGCATGGGTGTTCCTGGAACCTCTGACTGGGGGTCTCTGGGTCACCACAGCTTGTTCCTTTGTGTTCATTGGATTCGTTGTGTGGCTTCTTGAACACCGCATCAATAAAGATTTCCGCGGCCCTCCCTCACACCAGATTGGCACCAGAGAGAGGGTAGTGAGCAACACGGCAAGGTTTGTGGTGATCATATGGGTATTTGTGGTGCTGATTCTGACACAGAGTTACACAGCAAGTTTGACATCACTACTAACAGTAGAGCAGCTCCGACCAACTGTCACCAATGTATATGACCTCATAAAGCATAGGTTGAGCGTTGGGTATCACGGAGGTTCGTTTGTTCGTGGGATCTTGGAAAACCTTGGTTTCCAGGATTCACAGCTCAAAGTTTATAACTCTGCAGAACATTGTGACGAACTTCTCAGCAAAGGAAGTGAAAATGGCGGGATTGCTGCTGCCTTTGACGAAATGCCTTACATCAGGGTTCTACTTGGAACATATTGCTCTAAATACACCACAGTGGACCCAACATTTAAAACGGACGGTTTTGGCTTTGTTTTCCCAAGAAATTCTCCTCTTGTAGCCGATGTTTCAAGGGCAGTCCTGAAGGTAACAGAGGATCCTGTAATGAAACAAATTGAAAACGCTTGGTTTCACAACTATAGTAGTTGCCCAGATCCATGCACCTCAGTTTCTTCTAGTAGTCTTGGCCTAGATAGCTTTTGGGGCCTATTTCTCATAGCTGGAGTTGCATCCATCTCAGCCCTCTTCATCTTCGCAATCACATTCCTCTATGAACATAGGCATGCTTGGTTGAGCAATGATCCTAGTGCTTCAACATGGATTAGAATTGGTCTCTTGCTTAGAATCTTCGACCAAAAAGACATGAGCTCTCACACATTTAAGAAAGATGGTGGATCAGTGCAAGATAATGATCAAAGTAGCACCACTCATCATCATGACATAGGTGGTGCAGTTGAGGCTTCCCCAGGTGCATTACAATATTGCCCGCTAAGTCCTTCTAGTTACGCTGAATCAAACTTTTCCTCTTGCGGAGACCAGGGAACACCTTCCGAAGACAGTACAGAATTGAATATCCCAACATCAACAATAATTGAGCTCACTGTCTCACCAACAAGAACTATAGCCAACTAG 2898 0.4493 MNTIKYDAELIIVGLILLCPPWILVGHAQNTTTTTRRVNVGVVLDLAQTVGKIGLSCINMSLSDFYAAHTHYNTRLVLNIRDSQNDVVTAASAGLDLIKNEQVQAIVGPISSMQASFVVNLGEKAHVPIISFTATSPSLTSLGSSYFFRIAQNDSAQVDAISDIIQSFGWKEAVPIYIDNEYGRGIIPFLTNALQQFNIRVPYLSVIPPSATDVQISDELYKLMTMQTRVFIVHVPASPGSSLFTIADQIGMMSQGYVWITTNGMSNVLGSLDASVIDAMQGVLGVKTYVPKTKRLTDFEARWKREFVQANPTMVHANLNVFGLWAYDAITALASAVERVKSTNFGFQRSDDSTGFSDIDTLGVSQSGEHLRDALSDTAFRGLAGEFGLDNGQLQATTFQIINVNGNGERGIGFWTPHDRLTRSLTLTSGVTLSSTPNKSNGPNLGPIIWPGDSYSTPKGWQIPTNGKKLRIGVPVMSRPEFVNVALDPDTNTTKITGYCIDVFDAVVQALPYALPYELIPFAKPNGESKGTYDDLIMQNFDAVVGDTTIIANRSNYVDFSLPYTESGVSMVVPVKDNRKKGAWVFLEPLTGGLWVTTACSFVFIGFVVWLLEHRINKDFRGPPSHQIGTRERVVSNTARFVVIIWVFVVLILTQSYTASLTSLLTVEQLRPTVTNVYDLIKHRLSVGYHGGSFVRGILENLGFQDSQLKVYNSAEHCDELLSKGSENGGIAAAFDEMPYIRVLLGTYCSKYTTVDPTFKTDGFGFVFPRNSPLVADVSRAVLKVTEDPVMKQIENAWFHNYSSCPDPCTSVSSSSLGLDSFWGLFLIAGVASISALFIFAITFLYEHRHAWLSNDPSASTWIRIGLLLRIFDQKDMSSHTFKKDGGSVQDNDQSSTTHHHDIGGAVEASPGALQYCPLSPSSYAESNFSSCGDQGTPSEDSTELNIPTSTIIELTVSPTRTIAN* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1893 965 SUPERFAMILY Periplasmic binding protein-like II 448 800 - -
Dod09g1893 965 MobiDBLite consensus disorder prediction 882 904 - -
Dod09g1893 965 CDD GluR_Plant 468 799 - -
Dod09g1893 965 Gene3D - 364 468 - -
Dod09g1893 965 Pfam Ligand-gated ion channel 801 832 IPR001320 GO:0015276|GO:0016020
Dod09g1893 965 CDD PBP1_GABAb_receptor_plant 41 425 IPR044440 -
Dod09g1893 965 Gene3D - 469 582 - -
Dod09g1893 965 Gene3D - 155 321 - -
Dod09g1893 965 Pfam Receptor family ligand binding region 57 407 IPR001828 -
Dod09g1893 965 Pfam Bacterial extracellular solute-binding proteins, family 3 493 800 IPR001638 -
Dod09g1893 965 PIRSF IGluLR_plant 7 912 IPR017103 -
Dod09g1893 965 SUPERFAMILY Periplasmic binding protein-like I 37 461 IPR028082 -
Dod09g1893 965 Gene3D - 583 629 - -
Dod09g1893 965 Gene3D - 630 700 - -
Dod09g1893 965 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 898 - -
Dod09g1893 965 PANTHER GLUTAMATE RECEPTOR 2.9 38 898 - -
Dod09g1893 965 SMART GluR_14 471 801 IPR001320 GO:0015276|GO:0016020
Dod09g1893 965 Gene3D - 750 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1893 Dod-Chr9 40481532 40487374 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1893 2 926 Ion Channels AT2G29120 50.261 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1893 K05387 - tcc:18507124 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1893 09 40481532 40487374 Dod09g1893 09 40481532 40487374 ECH