Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1855 ATGAGTAGCTTGGTCGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCGATTTATAATCTAGATGATTCAGACGATGATGCTGATTTTTTGCCTAGAAAACCTGGGACAACTCAGGAGAAGTTGGAGAGGATAGTTAGAAGTGATGCAAAAGAGGATTTGTGTCAAGCCTGTGGAGAAAATGGAAATCTTCTGAATTGTGAAACATGCACTTATGCTTACCATCCTAGGTGTTTAGTTCCACCAATTAAAGGTCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCGCTTAATGATATTGATAAAATATTAGATTGTGAGATGCGCCCTACTGTAGCTGCCGACAGTGATGCCACAAAATTGGGGTCAAAGCAAACATTTGTCAAACAGTACCTTGTTAAGTGGAAGGGGCTATCATATCTGCACTGCACATGGGTGCCAGAGAAAGAGTTTGTGAAAGCTTACAAGACTTTTCCTCGTCTAAAGACCAAAGTGAACAACTTCCATCGTCAGATGGCGTCTGTCAATACTACTGAGGAAGACTTTGTTGCCATTCGACCTGAGTGGACTACAGTTGATCGAATACTTGCTTGCAGGTGCAGGGGTGATGATGATGAGAAGGAATATCTCGTGAAGTGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGGCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTTCGATCTAGATCCAGCAAACTTGCTTCCATTAAGCAAAAAAGCTGTGTAAAGGATGATGTCGAATTGAAGAAACATCAGAAAGAATTTCAACAGTATGAACATAGCCCTGAGTTTCTATCAGGCGGTACCCTACATCCATATCAGCTTGAAGGCTTGAATTTCTTGCGATTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGGAGAGGGCATTTCTCCACATCTGGTAGTTGCTCCACTTTCAACATTGCGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAACGTCGTTATGTATGTTGGATCTGCCCAAGCCCGTGCTGTTATAAGAGAGTATGATTTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCATATAATTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACCTTGATTCAGCATCATTGAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAACAACCTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGACATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTACTGCGAAGAGTGAAAAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAGCTTATTTTACGTGTTGAACTGAGCAGCAAACAGAAAGAATATTATAAGGCGATTTTAACCCGTAATTATCAGATATTAACTCGCCGTGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTCCGCAAGCTCTGTTGTCATCCTTACATGCTAGAAGGAGTTGAACCGGATATTGACGATCCAAAAGAAGCATTCAGACAGCTGCTGGAATCATCAGGGAAGTTACAATTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTCCTCATATATTCCCAATTTCAACATATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAAGAATAGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTAAGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGTGGATTGGGAATAAACCTCGCAACTGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACAAGAGGAACCATTGAAGAAAGGATGATGCAGATGACAAAGAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGGCTAAAGGCTCAAAACATCAACCAGGAAGAGTTGGATGACATCATAAGGTATGGCTCGAAGGAGTTGTTTGCGGATGAAAATGATGAAGTGGGCAAATCTCGCCAAATTCATTATGATGCTGCTGCTATCGATAGATTGCTGAATCGTGATCAAGTTGGAGATGAAGAGGCTACTTTAGATGATGAAGATGACGATGGATTTTTGAAGAACTTTAAGGTTGCAAATTTTGAGTATATTGATGAAGTTCAGGCAGCAGCAGAGGAGGCTGCACAAAAAAGAGCAATGGAGACTATGAACAGTACAGAAAGAACCCATTATTGGGAGGAGTTGTTAAAAGACAGATATGAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGCAAAGGGAAGCGAAATCGAAAGATGATGGTTTCCGTTGAGGACGATGACCTAGCTGGCCTGGAAGATGTAAGCTCTGATGGTGAGGATGACAACTATGAAGCAGAGCTTACTGATGGTGATTCAAATTCTACTGGAACTACTACTGCTAGAAGGCCATATAAAAAGAAACCTCGGGCTGATAGCATAGAGCCACTTCCTCTGATGGAAGGTGAAGGGAGATCATTCAGAGTACTTGGTTTTAATCAGAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGAATTTGATTGGCAGGAGTTTACTTCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGATTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCCCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATACAAGATGTACTTGTAAGGATTGCAGTTCTGATCCTGATAAGGGACAAAGTAAAGTTTGCATCAGAAAATCCTGGAACTCCACTGTTTTCGGATGACATCTTACTACGCTATCCAGGTTTGAAGGGTACAAAGATATGGAAGGAGGAGCATGATTTAGTTTTACTGCGTGCTGTGTTGAAGCATGGGTATGGAAGGTGGCAGGCTATTATTGATGATAAGGATCTGAAAATTCAGGAGCTCATATGTCAGGAGTTGAATCTTCCCGTCATAAATTTACCAGTACCAGGACAGGCTGGTTCTCAGGTGCAAAATGGCACAAATGTGACAACTACAGAAGTTCCCAGTAACCAATGCAGGGAAAATGGTGGGAGTGACATGGCAGCTGATGGTGCACAAGGTTCCGGTGATGCTAGGAACCAAACACACATATATCAAGACTCCTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAAATGAAGTAACAAATGAAGAACTTAAAAGTGAACCCAAGGCTACCAATTTTACAAGTTATAAATCAGGGGACACTGACACCCAAATGATTGATCAACTGCCTGAAGTGAAAGCAATAGCTGCAGAAGAAATTTCAATTGCTTGTGATAATGATCCAAATCGATCAGAATTGGTTCGACTTTACAATGAGATGTGCAAGGTAGTGGAGAAAAATCCCGTGGATTTAGTTAGAACATCTTTAGTAATGGAACCAGCAGAGGTCAATGTGGCCAAGAATTTCTTGCCACTAAAAACCATTTGTGAAGATGTCAACCGAATTCTCTCACACACACAAGATCAGACTACTGCAGAAAAGTCAACATTGAATTCAGGTAATAAATCAGAGGCTATATCACTTGGTGAAGTTTCGGGGACAACTATCCCTCAAGATGACTGCAAACCTGATAACTCCATTGACAATGAGACAAAAGATGTAGTAATAGAATCAGAACCTGAAAAAGAAAGCAACACTAGCCTGGTTAACGAGAATAATCAAACCCCAAGTGTTCCGGAGATAAAGGAAAGTGATGCAGAAATGGATGAAGCCAAGAATGACGCTGAGTTGAATGAAAACACACAGAAGTCTGGTGCTGGGGTCGTTGTATTGGATGGTTAA 4332 0.4049 MSSLVERLRVRSDRRPIYNLDDSDDDADFLPRKPGTTQEKLERIVRSDAKEDLCQACGENGNLLNCETCTYAYHPRCLVPPIKGPLPDNWRCPECVSPLNDIDKILDCEMRPTVAADSDATKLGSKQTFVKQYLVKWKGLSYLHCTWVPEKEFVKAYKTFPRLKTKVNNFHRQMASVNTTEEDFVAIRPEWTTVDRILACRCRGDDDEKEYLVKWKELPYDECYWEFEADISAFQPEIERFNRFRSRSSKLASIKQKSCVKDDVELKKHQKEFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGEGISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIREYDFYFPKKQKKIKKKKSGHIISESKQDRIKFDVLLTSYEMINLDSASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDPKEAFRQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEVGKSRQIHYDAAAIDRLLNRDQVGDEEATLDDEDDDGFLKNFKVANFEYIDEVQAAAEEAAQKRAMETMNSTERTHYWEELLKDRYEEHKVEEFNALGKGKRNRKMMVSVEDDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTTTARRPYKKKPRADSIEPLPLMEGEGRSFRVLGFNQNQRAAFVQILMRFGVGEFDWQEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDVLVRIAVLILIRDKVKFASENPGTPLFSDDILLRYPGLKGTKIWKEEHDLVLLRAVLKHGYGRWQAIIDDKDLKIQELICQELNLPVINLPVPGQAGSQVQNGTNVTTTEVPSNQCRENGGSDMAADGAQGSGDARNQTHIYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKANEVTNEELKSEPKATNFTSYKSGDTDTQMIDQLPEVKAIAAEEISIACDNDPNRSELVRLYNEMCKVVEKNPVDLVRTSLVMEPAEVNVAKNFLPLKTICEDVNRILSHTQDQTTAEKSTLNSGNKSEAISLGEVSGTTIPQDDCKPDNSIDNETKDVVIESEPEKESNTSLVNENNQTPSVPEIKESDAEMDEAKNDAELNENTQKSGAGVVVLDG* 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1855 1443 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Dod09g1855 1443 MobiDBLite consensus disorder prediction 905 924 - -
Dod09g1855 1443 MobiDBLite consensus disorder prediction 1337 1443 - -
Dod09g1855 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 780 IPR027417 -
Dod09g1855 1443 MobiDBLite consensus disorder prediction 905 954 - -
Dod09g1855 1443 SMART PHD_3 53 96 IPR001965 -
Dod09g1855 1443 CDD CD2_tandem 190 243 - -
Dod09g1855 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Dod09g1855 1443 Gene3D - 280 530 IPR038718 -
Dod09g1855 1443 Gene3D - 1038 1218 - -
Dod09g1855 1443 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Dod09g1855 1443 SMART ultradead3 284 497 IPR014001 -
Dod09g1855 1443 MobiDBLite consensus disorder prediction 1139 1159 - -
Dod09g1855 1443 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1056 - -
Dod09g1855 1443 Coils Coil 1411 1431 - -
Dod09g1855 1443 MobiDBLite consensus disorder prediction 1391 1410 - -
Dod09g1855 1443 CDD CD1_tandem 98 172 - -
Dod09g1855 1443 Gene3D - 100 175 - -
Dod09g1855 1443 Pfam PHD-finger 54 96 IPR019787 -
Dod09g1855 1443 Pfam Helicase conserved C-terminal domain 611 724 IPR001650 -
Dod09g1855 1443 MobiDBLite consensus disorder prediction 1412 1427 - -
Dod09g1855 1443 MobiDBLite consensus disorder prediction 1337 1372 - -
Dod09g1855 1443 CDD SF2_C_SNF 609 735 - -
Dod09g1855 1443 Pfam Chromo (CHRromatin Organisation MOdifier) domain 122 156 IPR023780 -
Dod09g1855 1443 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 243 IPR023780 -
Dod09g1855 1443 Gene3D - 531 755 IPR027417 -
Dod09g1855 1443 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 614 775 IPR001650 -
Dod09g1855 1443 SMART DUF1087_2 841 907 IPR009463 -
Dod09g1855 1443 MobiDBLite consensus disorder prediction 1373 1390 - -
Dod09g1855 1443 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Dod09g1855 1443 SMART chromo_7 99 168 IPR000953 -
Dod09g1855 1443 SMART chromo_7 190 246 IPR000953 -
Dod09g1855 1443 Gene3D - 178 243 - -
Dod09g1855 1443 Pfam CHD subfamily II, SANT-like domain 935 1068 IPR009462 GO:0003677|GO:0006338
Dod09g1855 1443 MobiDBLite consensus disorder prediction 1139 1176 - -
Dod09g1855 1443 Pfam CHD subfamily II, DUF1087 846 904 IPR009463 -
Dod09g1855 1443 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Dod09g1855 1443 Pfam SNF2-related domain 308 588 IPR000330 GO:0005524|GO:0140658
Dod09g1855 1443 ProSiteProfiles Chromo and chromo shadow domain profile. 192 243 IPR000953 -
Dod09g1855 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 521 IPR027417 -
Dod09g1855 1443 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1056 - -
Dod09g1855 1443 SMART helicmild6 640 724 IPR001650 -
Dod09g1855 1443 SMART DUF1086_2 912 1071 IPR009462 GO:0003677|GO:0006338
Dod09g1855 1443 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Dod09g1855 1443 SUPERFAMILY Chromo domain-like 178 244 IPR016197 -
Dod09g1855 1443 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 300 486 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1855 Dod-Chr9 40154463 40171757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1855 310 785 RAD5 or RAD16-like Gene Family AT1G02670 22.842 2.19e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod09g1855 SNF2_N 1.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1855 K11643 - gmx:100804203 2506.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1855 09 40154463 40171757 Dod09g1855 09 40154463 40171757 ECH