Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1854 ATGACTATGGAGAACGGGGTGGATGATACCAGTGATCAGTTTCCCAAAGGAATGCGTGTTCTTGCAGTTGATGATGACCCCACATGCCTCATGGTTCTGGAAACTTTGCTAAGGAGATGTCAATATCATGTTACCACAACTAGTCAAGCAATAAAGGCATTGAAGCTATTGAGAGAAAACAAGTTTGACCTGGTAATCAGTGATGTCCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGACTTGAGATGGACCTGCCTGTCATAATGTTGTCTGCAAATGGCGATACAAAGCTGGTAATGAAAGGGATTTCTCATGGAGCTTGTGATTATCTGCTGAAACCTGTGAGAATTGAAGAGCTAAAGAACATTTGGCAGCATGTTATCAGGAGGAGGAAGTTTGATTCAAAGGAGAAGAACAAAACCAGGAACCTAGATAAACCTACTTCTGACAGTGGCAATGTGCTAGGGTCAGCAGGAACAGGAAATTCAGATCAAAATGGGAAGCTGAGTAAAAAAAGAAAGGATCAGGATGATGAAGAAGATGAGGAGCAAGATAGTGGTCATGAAAATGAGGATCCATCAACCCAGAAGAAGCCTCGGGTTGTTTGGTCAGTGGAGCTTCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTAACGAGGGAGAATGTGGCAAGCCATCTCCAGAAATATAGGCTTTATCTGAAAAGAATTAGCTGTGTGGCGAACCAACAGGCCAATATGGTGGCGGCCCTTGGGGGTGCAGATCCATCCTATATGAGAATGGGTTCTTTGAGTGGGGTTGGTCATTTGCAAGCACTGAGTGGTTCGGGACAGTTTCCTAACAATACTTTCAGGTCCTTTCCACCTAGTGGGATGATTAGTAGATTGAATACTCCTTCTGGACTAAATGTGCATGGATTTCCTTCTCCTGGAGTATTTCAGTTGGGTCAATCACAAAATTTAAGCGACTGCACCACTGAACAGCTGAAGTTTCAGTCATCCATAGGTCCTGTCAATCAGAATGGTGTTCAGGGGATGTCAGTGCCTATGGGGCTTGATCCATTGCAACAAAATAAGGGTGTTATTCCTGTTCAAAACCTGACCAATGGTATTGATGTTAAACCAAATTTGCCCATTTCAAATAAACTCCCAGATCCAAGGTCAAGAGTAGCCTCCTCTGGCTCACACACTCCTCTTTTGGGTATCTCAAACAATCCCTTGATGTTGGAAGCACGCCCACAAGACACACAAGGGGTTATAGAATATGAAAATTCTACTTCATCAGTACCCGCTCAACATTCAGAACTTTCTTTCCCTTCGCTGGATCAAGGTAGGTATAGTGATAATTGGTCAAGTGCAGTTCAGCCATCTGGGATCCAGGTGAATTCTTTCCCTTCAGGTGAATGTTTTAGACAGACAGCTATCCCTCGGACAGGTGACATGGCTTCTTTACCCTTGCAAGGGGGGAATCCAAGTGTTCCTTCATCCATCCCTTCACTGCCAAGTCAATATTCTCACAATTCGATGACAGATGTGCACTCCCAAGGCGTGATGTTTACTAATAGACCTAGTCACATAAGCAATGATGCACTCTTTCAAGGGTGGGATGACCACAATCATGATGCTAGTTACCATTCAAATGTTATTAGCAGCACAATAAACTCTGTGACTCCAGTTAGTGGTGCTATTGGTCCAGCAGGTCATACACCAACAAACTCAAACTTACACAGAAACTTGGACTATAAATTTGGTGATCCCTTGCTAATGAAACATGATGGGGTGGTGAAGTTAAATAAGGAGACCTCATTGAAACCACATCAGGGGAATATCACGAACCAGCAGAGGTCTCAACATAGTCACTTCTCTAATAATGTTGGTTCACTGGAAGACTTAGTCGGTTCAATGATGAAACAGGAGCAAGATGGGACGAAATTATTGGACGGGAACTTCATTTGCAATAATTATTCTGGTGGCATATCAATGTGA 2055 0.4311 MTMENGVDDTSDQFPKGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAIKALKLLRENKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRRKFDSKEKNKTRNLDKPTSDSGNVLGSAGTGNSDQNGKLSKKRKDQDDEEDEEQDSGHENEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYMRMGSLSGVGHLQALSGSGQFPNNTFRSFPPSGMISRLNTPSGLNVHGFPSPGVFQLGQSQNLSDCTTEQLKFQSSIGPVNQNGVQGMSVPMGLDPLQQNKGVIPVQNLTNGIDVKPNLPISNKLPDPRSRVASSGSHTPLLGISNNPLMLEARPQDTQGVIEYENSTSSVPAQHSELSFPSLDQGRYSDNWSSAVQPSGIQVNSFPSGECFRQTAIPRTGDMASLPLQGGNPSVPSSIPSLPSQYSHNSMTDVHSQGVMFTNRPSHISNDALFQGWDDHNHDASYHSNVISSTINSVTPVSGAIGPAGHTPTNSNLHRNLDYKFGDPLLMKHDGVVKLNKETSLKPHQGNITNQQRSQHSHFSNNVGSLEDLVGSMMKQEQDGTKLLDGNFICNNYSGGISM* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1854 684 MobiDBLite consensus disorder prediction 627 648 - -
Dod09g1854 684 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Dod09g1854 684 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Dod09g1854 684 MobiDBLite consensus disorder prediction 401 426 - -
Dod09g1854 684 SMART REC_2 18 128 IPR001789 GO:0000160
Dod09g1854 684 MobiDBLite consensus disorder prediction 150 170 - -
Dod09g1854 684 MobiDBLite consensus disorder prediction 409 425 - -
Dod09g1854 684 Gene3D - 18 156 - -
Dod09g1854 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 659 - -
Dod09g1854 684 CDD REC_typeB_ARR-like 20 132 - -
Dod09g1854 684 SUPERFAMILY CheY-like 16 140 IPR011006 -
Dod09g1854 684 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Dod09g1854 684 PIRSF RR_ARR_type-B 1 682 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dod09g1854 684 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Dod09g1854 684 Gene3D - 198 261 - -
Dod09g1854 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Dod09g1854 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 659 IPR045279 GO:0009736
Dod09g1854 684 MobiDBLite consensus disorder prediction 139 203 - -
Dod09g1854 684 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1854 Dod-Chr9 40149072 40153421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1854 1 381 Response Regulator Gene Family AT2G25180 60.459 3.73e-133 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod09g1854 Response_reg 4.4e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1854 - K14491 gmx:100809002 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1854 09 40149072 40153421 Dod09g1854 09 40149072 40153421 ECH