Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1853 ATGGAAATTACACTAAGCCAACAGCCTCTTCTCTGTGATAACCTCAGCATCCTGTCTGCTGGAGATCAGGCTCCTCCAAGTCCAAGCACCCCATTGCAGAATCCACAAGAAAAGAAGCAGCAATCTATTGATCAGGAGGAATTAGAAGAAGAGAAGGAGGCAAAGGCAGATACTTTATTGGATCTGAATGTTCCTGGTGATGATTCTTCTCTTGGGTGCAGTACACAGCTCAATCTCACCACATTTTTAGACATGGATTCATCTAAGACTTCATCAGAAAACACTTCTCCTGGTTCTGATGCAGACCCAAGAGTCTTCTCTTGCAATTACTGCCAGAGAAAGTTCTACAGTTCACAAGCACTTGGGGGACACCAAAATGCTCACAAAAGAGAAAGGTCAATTGCTAAAAGAGGACAAAGGTTAGGAGCACATGTGATGAACTCAGCATCAGCATTTGGGATTCCTTTTCTTCATAATCATCTTCACCGCTATGCTAGTATTGCATCTCTACCCCTCCATGGTGCTTGTAGCAATAGTCCACTTGGAATTCAAGCTCACTCAATGATTCATAAGCCTTCTCATCATTTTTCATCAAACGGGTTTGGAGGCACTAGTGGAAACCGTGGCTGGCCAACACCTCTTATTGGTCAACAACCTGGAATAGGGAAGCTAGCTATGGAAACTTTCCACAAAACAGGACTATCATCAAGAGGTAGTGTTGGTAGATTTGATGTGGTGAAGAACATGCTCAATTCTGGAGCCAATGAAGAAATCAATGGATACCTGGTTAGTGGGACTCGTTTGAAGACTAATCAAGATGAAAAGAAGCACCTTGATTTATCTCTGAAGCTCTAA 855 0.4281 MEITLSQQPLLCDNLSILSAGDQAPPSPSTPLQNPQEKKQQSIDQEELEEEKEAKADTLLDLNVPGDDSSLGCSTQLNLTTFLDMDSSKTSSENTSPGSDADPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQRLGAHVMNSASAFGIPFLHNHLHRYASIASLPLHGACSNSPLGIQAHSMIHKPSHHFSSNGFGGTSGNRGWPTPLIGQQPGIGKLAMETFHKTGLSSRGSVGRFDVVKNMLNSGANEEINGYLVSGTRLKTNQDEKKHLDLSLKL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1853 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Dod09g1853 284 MobiDBLite consensus disorder prediction 18 39 - -
Dod09g1853 284 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
Dod09g1853 284 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 284 IPR044246 GO:0009788
Dod09g1853 284 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 284 - -
Dod09g1853 284 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Dod09g1853 284 Gene3D Classic Zinc Finger 85 152 - -
Dod09g1853 284 MobiDBLite consensus disorder prediction 18 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1853 Dod-Chr9 40134642 40135734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1853 6 284 C2H2 Transcription Factor Family AT5G10970 39.384 4.92e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod09g1853 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1853 - - gmx:100819663 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1853 09 40134642 40135734 Dod09g1853 09 40134642 40135734 ECH
Dod08g1728 08 41088493 41089948 Dod09g1853 09 40134642 40135734 PCT