Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1850 ATGGCCAGACCACAACAGCGTTACCGAGGCGTCCGACAAAGGCACTGGGGCTCTTGGGTCTCCGAAATTCGTCACCCCATATTGAAAACTAGGATATGGCTTGGTACTTTCGAAACTGCCGAGGATGCTGCTAGAGCCTACGATGAAGCAGCGAGGTTAATGTGTGGCACGAGGGCAAGAACGAACTTCCCTTACAACCCCATTGCGTCACAGTCATCAGCTTCGAAGCTTCTCTCTGCAACTTTGACCGCTAAACTGCATAGGTGCTACATGGCATCTTTGCAGATGACAAAGCCATCGCTGCCCGCAGAGCCTCAAAAAGTGGCTTCGTCACCGAATGCTATCTCCACAGCAAGCAATAACTTACCCGCGAAAAGCATTGAGACTGATGCGATGTTGCCGCAGAAGAGAGAAAAAGAGGAGCAAGAGGAATATTCAGAAGGGAACTGGGTTCTGAAGAAGGTTAAAGTGGAAAGTGGTCATCATCAGCAGCAGTTCAAGCCTCTTGAAGAGGATCACATAGAGCAAATGATAGAGGAGTTGCTTCATTATGGCTCTATTGAGCTCTGCTCTATCATTCCTCCCCGGGCTCATTGA 597 0.4925 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPIASQSSASKLLSATLTAKLHRCYMASLQMTKPSLPAEPQKVASSPNAISTASNNLPAKSIETDAMLPQKREKEEQEEYSEGNWVLKKVKVESGHHQQQFKPLEEDHIEQMIEELLHYGSIELCSIIPPRAH* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1850 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Dod09g1850 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Dod09g1850 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Dod09g1850 198 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Dod09g1850 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Dod09g1850 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 193 - -
Dod09g1850 198 MobiDBLite consensus disorder prediction 104 125 - -
Dod09g1850 198 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Dod09g1850 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 193 - -
Dod09g1850 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Dod09g1850 198 MobiDBLite consensus disorder prediction 102 125 - -
Dod09g1850 198 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1850 Dod-Chr9 40089511 40090836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1850 1 194 AP2-EREBP Transcription Factor Family AT5G25190 63.918 3.09e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod09g1850 AP2 6.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1850 - - gmx:100804510 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1850 09 40089511 40090836 Dod09g1850 09 40089511 40090836 ECH
Dod08g1722 08 40977907 40979242 Dod09g1850 09 40089511 40090836 PCT