Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1845 ATGGCGTACCATAACCACCACCTCTCGCAGGACCTTCCACTACATCACCATTTCACAGACCAACAACAACCTCAACAGCAACCCGATAACCACCCTCTCTCCGACAACACCATATTACCCGACCACCTCGCCCCCGACCCAACCTCCAAACCACACTCCGATCATCACCCCAATTGGCTCAACAACGCCCTTCTCCGAACCCACTACACCACCAGCGACACCAACAACAACGCCAACACCAATTTCCTTAACCTCCACACCGCCGCTTCCGATTCCACAGGCGCCGCTTCCCACTCCTCCGGCCAATGGCTCTCCCGCCCCGTCCTCCACCGCAACCACAGCGAGGTCATCGACGACGTCGCCGCCACCGGGGACTCCGTCATCGCGGCCACTATGTCCCACGAATCCACCGAGCTGAAGGCTGCCGCCGGCGGCGGAGACAGCAAGAGCGAGGCTGCGGCGACGGAGAGCGGCGGCGGAGGGGAGGGGTTGGGGAACTGGGTGAATGCGAGGTGCAAGGCGGAGATTCTGGCACACCCGCTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTTGACCAGCTGCCCAGGATCGACGCTCAGTTGGCCCAGTCCCAGAATGTTGTCGCCAAGTACTCTGCCTTCGGACAGCCCCCTCTCGGCGACGATAAGGAACTCGATCAATTCTTGTCACACTACGTTCTGTTACTCTGTTCCTTCAAAGAACAACTCCAACAACATGTGCGGGTCCATGCAATGGAAGCAGTTATGGCTTGCTGGGAGATAGAGCAATCCTTACAAAGCCTCACAGGAGTTTCGCCTGGGGAAGGCACAGGAGCAACAATGTCTGATGATGAAGATGACCAAGTAGATAGTGATGCCAATCTGTTTGATGCTGGTTTGGATGGTCCTGATAGCATGGGATTTGGCCCTCTTATTCCAACCGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAACTAAAGCATGAATTGAAACAGGGTTATAAGGACAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCCGGTGACACCACCTCTGTCCTTAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGTTTGCAATTGAAGCAGATCAATAACTGGTTCATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCATCTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGGTTAACACTTGA 1308 0.5436 MAYHNHHLSQDLPLHHHFTDQQQPQQQPDNHPLSDNTILPDHLAPDPTSKPHSDHHPNWLNNALLRTHYTTSDTNNNANTNFLNLHTAASDSTGAASHSSGQWLSRPVLHRNHSEVIDDVAATGDSVIAATMSHESTELKAAAGGGDSKSEAAATESGGGGEGLGNWVNARCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQPPLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDAGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKRVNT* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1845 435 SMART KNOX2_2 223 278 IPR005541 GO:0003677|GO:0005634
Dod09g1845 435 Gene3D - 354 427 - -
Dod09g1845 435 MobiDBLite consensus disorder prediction 19 59 - -
Dod09g1845 435 MobiDBLite consensus disorder prediction 138 160 - -
Dod09g1845 435 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Dod09g1845 435 SMART KNOX1_2 170 214 IPR005540 GO:0003677|GO:0005634
Dod09g1845 435 Pfam KNOX1 domain 173 213 IPR005540 GO:0003677|GO:0005634
Dod09g1845 435 CDD homeodomain 358 419 IPR001356 GO:0003677
Dod09g1845 435 ProSiteProfiles ELK domain profile. 335 355 IPR005539 GO:0003677
Dod09g1845 435 Pfam KNOX2 domain 227 277 IPR005541 GO:0003677|GO:0005634
Dod09g1845 435 SMART HOX_1 357 422 IPR001356 GO:0003677
Dod09g1845 435 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 48 433 - -
Dod09g1845 435 MobiDBLite consensus disorder prediction 415 435 - -
Dod09g1845 435 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 433 - -
Dod09g1845 435 MobiDBLite consensus disorder prediction 19 34 - -
Dod09g1845 435 MobiDBLite consensus disorder prediction 277 296 - -
Dod09g1845 435 Pfam ELK domain 335 356 IPR005539 GO:0003677
Dod09g1845 435 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Dod09g1845 435 SMART ELK_2 335 356 IPR005539 GO:0003677
Dod09g1845 435 SUPERFAMILY Homeodomain-like 357 421 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1845 Dod-Chr9 40012044 40016402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1845 1 432 Homeobox Transcription Factor Family AT5G25220 67.396 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod09g1845 KNOX2 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1845 - - bhj:120085761 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1845 09 40012044 40016402 Dod09g1845 09 40012044 40016402 ECH