Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1830 ATGTTTCTATGTAATCTTCTTTCCATGAACGAAGCCCGAATTGAAATCACTATCCCTCACTTGTTCAGATGCCCCATAAGTCTAGACTTGTTCGAAGATCCCGTGACTTTGTGCACAGGCCAAACCTATGACAGGTCTAGCATAGAGAAATGGCTTGCTGCTGGTAATCTCACATGTCCTGTCACAATGCAGAAGCTTCAGGATCCATCCATTGTTCCAAACACCACCCTTCGCCATTTGATCGATCAGTGGCTTCAACTTGGTCCCCAATTTGACCCTGGTAACTCTGCAACCATCGATTACTTAGCTGCTATTAAGAACACCCTTGAATCTCAAGATGAGTCCTCCTTAGAGAAGAAGCTCCAAGCACTTGAGAATATTAGAGTTCTCTCTGATGAGTACTGTTCTTTCAGGAAATCTTGTTTCATCCAATTGAGTTTCTTGCCTCTACTCCTTGAACTAGTTTTTGGAACGCCAGATGCTGAAGTGCTCTCACAAAATCACATGGAATTAATAGAGCTAGCGCTCTCTTGCATTCTAAAGTTGCTGCCTCTTGTCACTTTGGAGCCTCTAAACATGATCAAAGATGAGTCAAAATTAGCAACGTTCGTTATATTATTCGAGAAGGGAACGATCTCAGTTAAGACTAGTTTGTGTCATCTTATAGAATCATCCGCAGAACCGCAGTTAGAAGAGGTATGTAACGTGCTTGGAAACAATCACAAGCTTCTGCATGAGATTGTTATACTTGTTCGCCAAAATTGTGAGGTTTCTAAGGCTGCAATCAAGGCCATGTCAGCATTATGTTCGTTGCAATCCAACAGGGAGAGTTTGGTCAAAGCAGGAGCAATAGATGGGATCATGAGATACATTTCAGGTTCTGAAACAAGGCAGAAGAACTTGGCACCGATGGCAATGGGCATAATAGAGAAGCTTTTGGTGCTAGAGAGTGCTAAAGTCTCATTGGTGAACCACCCCAATGGTATTGAGACTTTGGTGAGGATGGTTTTCAGGGTATCATGTAATCAAGAGTGCAGTGAGAGTGCTGTTGGAATACTTTTGGTTCTTTGTCGTGATTTTGGGAGTGCAAGAGAGGGAGCAATTGGGGCCGGGATTTTGACTCAGTTGCTGTTCCTTCTGCAGAGCCAGTGTGGCACAAGAACAAAAACAAAGGCAAGAATGCTGCTCAAATTGCTAAGATCCAAGTGGAATGAGGAACCAAAGCAGGTGTAG 1233 0.4331 MFLCNLLSMNEARIEITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQKLQDPSIVPNTTLRHLIDQWLQLGPQFDPGNSATIDYLAAIKNTLESQDESSLEKKLQALENIRVLSDEYCSFRKSCFIQLSFLPLLLELVFGTPDAEVLSQNHMELIELALSCILKLLPLVTLEPLNMIKDESKLATFVILFEKGTISVKTSLCHLIESSAEPQLEEVCNVLGNNHKLLHEIVILVRQNCEVSKAAIKAMSALCSLQSNRESLVKAGAIDGIMRYISGSETRQKNLAPMAMGIIEKLLVLESAKVSLVNHPNGIETLVRMVFRVSCNQECSESAVGILLVLCRDFGSAREGAIGAGILTQLLFLLQSQCGTRTKTKARMLLKLLRSKWNEEPKQV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1830 410 SUPERFAMILY ARM repeat 252 400 IPR016024 -
Dod09g1830 410 SUPERFAMILY RING/U-box 11 86 - -
Dod09g1830 410 Pfam U-box domain 18 86 IPR003613 GO:0004842|GO:0016567
Dod09g1830 410 SMART Ubox_2 21 84 IPR003613 GO:0004842|GO:0016567
Dod09g1830 410 CDD RING-Ubox_PUB 22 64 IPR045210 -
Dod09g1830 410 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842|GO:0016567
Dod09g1830 410 PANTHER WDSAM1 PROTEIN 17 402 IPR045185 GO:0061630
Dod09g1830 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 88 IPR013083 -
Dod09g1830 410 Gene3D - 95 410 IPR011989 -
Dod09g1830 410 PANTHER OS02G0542800 PROTEIN 17 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1830 Dod-Chr9 39881830 39883855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1830 16 405 U-box Gene Family AT3G19380 31.051 5.50e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1830 - - gmx:100815247 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1830 09 39881830 39883855 Dod09g1830 09 39881830 39883855 ECH