Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1820 ATGCCCACTTGGTGGGGTAAAAAGTCCAGTAAGACCAAGCAACAACAACAAGTGCAGCAGCAGCAGCCACAGCCACATGGCGGCGCACGTCACTTCACCTTCATCAGAAACAACGAGGCTGTTGCTGCCAAGAAAGGTGGCAAGCCCAACCACAGCTTCGACGACGCCGTCTCCACCGGCTTCTCCCGCACCTCCCCCAGGGTCAGCAGGGATTTCTCTTCCGCTGCCCTAGCTGCTGGCGGCGGCGGCTCCTCTTCCGGTTTCTCCTGCTTCGATTCCGACGAGAAGAAGGGGCTCCCCTTGCCTCGCCCCTCCGTCTCCTCCACCCAGAGCTTCGGCAACGATCAAGGATCTGCTTCTGCTTCTTGTTCCAGTGTCAGCTCCACTGGCTCCTTTGATGATCATCCACCCACTCCTCGCCCTCAGATCAATGCCACCAGGGGACAAGGCGACATGAAGTCCAAAGTGAGGTCAAAAAGTCCAGGTCCTGGTTCAAGAGGGCCTACCAGCCCTACGTCACCGCTTCATCAAAGGTTGCATGCTTTTAGTCTTGACTCCCCTACAGGCAGGCAAGAAGATGGAAGGAGTGAATGCCATCCATTGCCTCTTCCGCCAGGCTCTCCTACTAGTCCTTCATCTCTTTCCAACACACGAGCAAATGGACTGCTAGAAAACACTACCAGTAACCTGTCCAAGTGGAAGAAAGGAAAGCTTCTAGGACGTGGAACATTTGGCCATGTTTATGTGGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTATCTGTGATGATCAAACATCAAGAGAGTGCTTCAAACAACTTAATCAGGAGATAAACTTGCTTAGTCAGCTTTCACATCCGAACATTGTCCAATACTATGGGAGTGAGTTGGGAGAAGAAACACTATCTGTTTATTTGGAATACGTCTCTGGTGGCTCTATTCACAAATTGCTTCAGGAATATGGGGCATTTAAGGAACCTGTTATTCAAAATTATACCAGGAAGATAGTCTCTGGACTAGCCTATCTTCATGGTAGAAATACAGTGCATAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAGTCAAGCTGGCAGACTTTGGAATGGCTAAACATATAAGTGCTTCTGCCTCGATGCTTTCTTTCAAAGGAAGTCCATATTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATTTGGAGCTTGGGATGCACAGTTCTCGAAATGGCAACATCAAAGCCTCCTTGGAATCAATACGAAGGGGTGCGATATTGGATGTTTAGAACAAGCATTTATTTTCACATTTGTTATGATCCTGTTTGA 1374 0.4789 MPTWWGKKSSKTKQQQQVQQQQPQPHGGARHFTFIRNNEAVAAKKGGKPNHSFDDAVSTGFSRTSPRVSRDFSSAALAAGGGGSSSGFSCFDSDEKKGLPLPRPSVSSTQSFGNDQGSASASCSSVSSTGSFDDHPPTPRPQINATRGQGDMKSKVRSKSPGPGSRGPTSPTSPLHQRLHAFSLDSPTGRQEDGRSECHPLPLPPGSPTSPSSLSNTRANGLLENTTSNLSKWKKGKLLGRGTFGHVYVGFNSENGQMCAIKEVRVICDDQTSRECFKQLNQEINLLSQLSHPNIVQYYGSELGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRKIVSGLAYLHGRNTVHRDIKGANILVDPNGEVKLADFGMAKHISASASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTVLEMATSKPPWNQYEGVRYWMFRTSIYFHICYDPV* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1820 457 Gene3D Transferase(Phosphotransferase) domain 1 230 451 - -
Dod09g1820 457 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 439 - -
Dod09g1820 457 PANTHER MAP KINASE KINASE KINASE 1 439 - -
Dod09g1820 457 MobiDBLite consensus disorder prediction 55 71 - -
Dod09g1820 457 ProSitePatterns Protein kinases ATP-binding region signature. 239 262 IPR017441 GO:0005524
Dod09g1820 457 SMART serkin_6 233 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g1820 457 MobiDBLite consensus disorder prediction 1 27 - -
Dod09g1820 457 ProSiteProfiles Protein kinase domain profile. 233 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g1820 457 MobiDBLite consensus disorder prediction 1 30 - -
Dod09g1820 457 SUPERFAMILY Protein kinase-like (PK-like) 222 447 IPR011009 -
Dod09g1820 457 MobiDBLite consensus disorder prediction 43 220 - -
Dod09g1820 457 MobiDBLite consensus disorder prediction 103 135 - -
Dod09g1820 457 MobiDBLite consensus disorder prediction 163 179 - -
Dod09g1820 457 Pfam Protein kinase domain 234 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1820 Dod-Chr9 39833470 39837396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1820 1 439 MAP Kinase Kinase Kinase AT1G53570 59.251 2.12e-161 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Dod09g1820 Pkinase 1.2e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1820 K04421 - gmx:100813122 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1820 09 39833470 39837396 Dod09g1820 09 39833470 39837396 ECH
Dod04g2536 04 49215776 49220286 Dod09g1820 09 39833470 39837396 PCT