Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1804 ATGGATATTAACCGGGACACATTCACAAATGTTAGCAGCAGCACTTGGAATAATATTGACAAGATGGAAACAGAAGAACACAACATCATTTCGCTCCATGATCATCACCAAATCCCTATTTCCTCTGGAATCTGGCCCAACAACAACTACCACCCTCTTCAAGTGCATCATCATCAGATCACACCATCCTCACCCTCATCCTCATCTGGCATCGCTCCCTCTTCGAGTTTCTTCAATGAAATACTAGGCATCCACTTCGAAGAAGACGAAGAGACAGAGGAAGAGCTAGGAGCCATGAAAGAGATGATGTACAAGATCGCAGCTATGCAGCCAGTGGACATCGACCCTGCAACAATCAGAAAGCCCAAGAGGCGAAACGTGCGAATAAGCGATGATCCTCAGAGTGTTGCTGCACGCCACAGGCGAGAGAGGATCAGTGAAAGGATCCGAATCCTTCAAAGGCTTGTCCCCGGAGGAACCAAAATGGACACCGCTTCAATGCTTGATGAAGCAATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTCCAATCAACCCCTTCTCATTCTCAGCCTCTTTCACAATCACCAAATTGCATTGGAACGGGTAGTGCTAGCAGCTTGTTGTTAGCCACAACCGGCGGTGATTGGCCTTCTGCATCAAATATACTTAACAGTTCCGCCGCCACCTCCTCCATGGACATGCCGGCTTCCGGAATGGGATTCGGCATCATGAGCCATGGCCATGCTGGTGATGCCCCATCCAGCTTCAACCATCATAAGGTAATTAGCGAATGA 804 0.4813 MDINRDTFTNVSSSTWNNIDKMETEEHNIISLHDHHQIPISSGIWPNNNYHPLQVHHHQITPSSPSSSSGIAPSSSFFNEILGIHFEEDEETEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPSHSQPLSQSPNCIGTGSASSLLLATTGGDWPSASNILNSSAATSSMDMPASGMGFGIMSHGHAGDAPSSFNHHKVISE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1804 267 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 249 IPR045843 GO:0003700|GO:0006355
Dod09g1804 267 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 249 - -
Dod09g1804 267 SMART finulus 135 184 IPR011598 GO:0046983
Dod09g1804 267 CDD bHLH_AtIND_like 130 187 - -
Dod09g1804 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Dod09g1804 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 191 IPR036638 GO:0046983
Dod09g1804 267 Pfam Helix-loop-helix DNA-binding domain 139 178 IPR011598 GO:0046983
Dod09g1804 267 Gene3D - 132 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1804 Dod-Chr9 39625242 39626045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1804 84 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 75.455 1.44e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g1804 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1804 - - aprc:113856609 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1804 09 39625242 39626045 Dod09g1804 09 39625242 39626045 ECH
Dod04g2524 04 49084887 49085708 Dod09g1804 09 39625242 39626045 PCT