Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1803 ATGAATGAGGGTCGTTTCAGGTTTCAGGTGATTTATTTTTTATTGTTGTTTAATTCAGAACACATTGCAAACATCACGGTTTTGGCTAGTGAAATGAGTGGAAGTGGCAGAAAGCGCTCTTCAAAGTGGGATTTGAGAGATGGTTCTGAATTTGCACCTGATAGTAAGCAATTGCGGTCTGGATGGTCCTCTAGAGATGTTGCTGGTAGCAATAATTCGAAGTGGTCTTATATGGAAGGAAATGACAAGTTGAAACCTGGCTTGGGTAGGGAACCTTTCTCTGGAGGCAGAGGTTCAAGTAAAGATGATATTATGAATAAAGATTATAGAGGTATGGATGCAAAAATGGAGTGGGAAGCGGATGCAAGTTACAGCAAGAAAATATCTCCTGGGTTTGAGGAATGGAAACATAAGAGACATAGTCAATCCCCAAAAAATGGTTGGAGCAGGTCAGGCAGGGGTAGTAGGAGCAGAAGCCCTCCCCATGGTTTTAGGTTGGATTCGGGAGTCAATGACAGAAATAGAATGAGGGCTGGAGGATCCACACAAATATGCAGAGATTTTTCTGCAGGTAAATGCAGAAGAGGCAGCCATTGCCATTTTCTTCACCATGATGACCAGAATTATGAGGATAGTTGGGAAAATAAAAACAGGGAAGAGGGAGCTCCCAGATATTCCGCTTCACATGAAAGTAGGGACCACTCTCTTAGGAGTGGTAGGTCTAATGAAGCTTGTATTCATTTTACAAAAGGCAGGTGTAGAATGGGAGCATCATGCAAATATGTGCATCATGACAGTTCTGATGGATATGTTAGAGGTTCCATGGATGAATTAACTAGAGAAAGGGAAAATGATGGGAGGCGCAGAGATAATTCTATTGAGCAGGGCAGTGGGCATGTGCCAAACCGCAGTGGTGATACTATTTGCAAATTTTTTGCTAATGGAAGTTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAACATTTAGGAGCCCTAATAGAAGATTAAGGGATGATAAGTGGGGAGGCAATCTAGGTGGAGATCATCAGACATTGGATAGACCAAAATTGAGTGATTCAATTAGTCCTAATGGAAGGTTAAGAAGTGATAGATGGGGTATAGATGGAAGTATGGCTGATGCGGATAAATTATGGGACAGTCCAAAGCGTAATAAGATAGTTCCTGCCTCTGATTCAGCAAATCTGGCTGAAGATAAAAGTGGAAATATGGGTGCCACTGACCCTGGACTTACTGTATGGCCTACGAGGGATGGACAGGATCATAGTCTAGATAAGAGCAGAGTGCATGGTGAACCGCCATTTTCAAGTGATAAGAAGGAAGCTGACCATTGGATAGTAGAAAATGCTGGTGCCAACATGCGTACGCCGCTGTCAATAAGTACAGACATTTGGCCTGGTGATGCAAAAATGTCTCCTGATTGGAATTATAGGGTAAGATCTTCCAGCCGTATAGAAGAAGAGCATGGACAAAATAATGATGGGTTAACCCAGGGCAGTACGTATGTAGCCACTGCTGACCATGACAGAATACAAGTTACTCCAGGACAAGATTTTAATCAGAATTTGCAAAATATTAATGCTTTGGATTCTTCAAGCTGCCATGCACTTGGACAAAGTCACATGGCAGTTCCCATTCTTCCATCAAGAGCAGGAATGATTGAAGGTTTGCAAAAGCACACTGTTGAACCAAATATCATGGATGCAGGCTCATCACAAATTAGTTCCAGAAATCCTCCGGACATGGTAAACAAAGAACAGCTTGCTCACTTGTCCAATCTCTCAGCCTCTCTGGCTCATATCCTTGGATCAGGTCAGCAGCTGCCACAACTTTATGCTGCCTTAAATTCTCATAATGAGAAGGACCCTTCCTCCCTAGCCAAAACTGAAGAGCCTACTATGCCGGTTTCCAATACATTGGTCAAGCCAGATCCTGGTGTTCCTGGTGTTGGATTCCCAAAGCAGTATGATCCAATGTGTGATAGTATTGAGCTAAAGGATTCTGTTGCAAGTGGGGTCCGCCCAGCCTTTTCTCCAAGCGAAAAAAATGCAGTTGATGTGGAAATTCCATCTCTGTTCTCTAACACAGGGAGACAAAATTATGTTGATTCTTCTAAGGAGAACAATGAAGTGGTAGCTGAGGAAAGACAAAATTCTCAAGATGATCTTAAAAATACAAAAGAGAATGGTCCTTTGGAAAACATGGACCAAAATGGTGGACCAGATGAGGCCAAGAAAACCAAGGATGTGAAGGAGATTCGTGCATTTAAATTTTCATTGGTTGAATTTGTTAAGGAGCTTCTGAAACCTACATGGAAAGAAGGTCAAATCACTAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACCGGTTCCATGCAGGAGGGCCATATTCCTCAGACACAGGAGAAAATTGACCATTATTTGTCATTTTCAAAACCGAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGGCCTAG 2532 0.4182 MNEGRFRFQVIYFLLLFNSEHIANITVLASEMSGSGRKRSSKWDLRDGSEFAPDSKQLRSGWSSRDVAGSNNSKWSYMEGNDKLKPGLGREPFSGGRGSSKDDIMNKDYRGMDAKMEWEADASYSKKISPGFEEWKHKRHSQSPKNGWSRSGRGSRSRSPPHGFRLDSGVNDRNRMRAGGSTQICRDFSAGKCRRGSHCHFLHHDDQNYEDSWENKNREEGAPRYSASHESRDHSLRSGRSNEACIHFTKGRCRMGASCKYVHHDSSDGYVRGSMDELTRERENDGRRRDNSIEQGSGHVPNRSGDTICKFFANGSCRNGKYCRFSHDRQTFRSPNRRLRDDKWGGNLGGDHQTLDRPKLSDSISPNGRLRSDRWGIDGSMADADKLWDSPKRNKIVPASDSANLAEDKSGNMGATDPGLTVWPTRDGQDHSLDKSRVHGEPPFSSDKKEADHWIVENAGANMRTPLSISTDIWPGDAKMSPDWNYRVRSSSRIEEEHGQNNDGLTQGSTYVATADHDRIQVTPGQDFNQNLQNINALDSSSCHALGQSHMAVPILPSRAGMIEGLQKHTVEPNIMDAGSSQISSRNPPDMVNKEQLAHLSNLSASLAHILGSGQQLPQLYAALNSHNEKDPSSLAKTEEPTMPVSNTLVKPDPGVPGVGFPKQYDPMCDSIELKDSVASGVRPAFSPSEKNAVDVEIPSLFSNTGRQNYVDSSKENNEVVAEERQNSQDDLKNTKENGPLENMDQNGGPDEAKKTKDVKEIRAFKFSLVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGSMQEGHIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1803 843 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 32 841 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 210 239 - -
Dod09g1803 843 Pfam CCCH-type zinc finger 308 328 IPR041367 -
Dod09g1803 843 Pfam RNA-binding, Nab2-type zinc finger 244 263 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 428 448 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 272 294 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 35 106 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 717 738 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 56 78 - -
Dod09g1803 843 ProSiteProfiles Zinc finger C3H1-type profile. 303 330 IPR000571 GO:0046872
Dod09g1803 843 MobiDBLite consensus disorder prediction 272 305 - -
Dod09g1803 843 ProSiteProfiles Zinc finger C3H1-type profile. 239 266 IPR000571 GO:0046872
Dod09g1803 843 MobiDBLite consensus disorder prediction 628 655 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 334 376 - -
Dod09g1803 843 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 204 IPR000571 GO:0046872
Dod09g1803 843 ProSiteProfiles Zinc finger C3H1-type profile. 179 206 IPR000571 GO:0046872
Dod09g1803 843 MobiDBLite consensus disorder prediction 705 756 - -
Dod09g1803 843 SUPERFAMILY CCCH zinc finger 305 328 IPR036855 GO:0046872
Dod09g1803 843 SMART c3hfinal6 240 265 IPR000571 GO:0046872
Dod09g1803 843 SMART c3hfinal6 303 329 IPR000571 GO:0046872
Dod09g1803 843 SMART c3hfinal6 179 205 IPR000571 GO:0046872
Dod09g1803 843 MobiDBLite consensus disorder prediction 134 177 - -
Dod09g1803 843 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 32 841 - -
Dod09g1803 843 Gene3D - 300 354 - -
Dod09g1803 843 Gene3D - 175 279 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 392 448 - -
Dod09g1803 843 MobiDBLite consensus disorder prediction 37 53 - -
Dod09g1803 843 Coils Coil 718 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1803 Dod-Chr9 39609448 39616682 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod09g1803 zf-CCCH 0.00012 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1803 - K22909 gmx:100783856 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1803 09 39609448 39616682 Dod09g1803 09 39609448 39616682 ECH
Dod04g2523 04 49068061 49074552 Dod09g1803 09 39609448 39616682 ECH