Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1793 ATGGTGAGAGACGATCTATGCATCAGTGTTCCCAGCTACTTCAAGTGCCCTATCTCCCTCGACGTCATGAAATCCCCTGTGAGCCTCTGCACCGGAGTCACCTACGACCGCTGCAGCATCCAACGCTGGCTTGACAGCGGAAACAACACCTGCCCCGCCACCATGCAGCTCCTTCACACTAAGGACTTCGTTCCCAACCGCAACTTGCAGAGCCTCATCCAGATCTGGTCTAACTCGGTCGCTGACCAAGTCGACTCGCCCGCTTCCGAGTCCGTCCCTTCCGAGGACCAGCTCCTTCAAGCCATCGCCGAATTGGAATCCCCCAGCGGGAAAGTGCTCGATTCGATCGCAAAAGTTGTTCGTTTCGCGGAGGACTCTGAAGAGAACAGAGTCTTCCTCGCGAAATTGAACGGCTTCGTGGCCGTGCTCGTTGGTTTCCTCGGCAATGCGGGCGCCGGAGAAACCAGAAGCGTTGAATTCCTCGAGCGAGTTGTGACGGCGTTAGGTCTGGTTCTGGAGAAAATCGAAGATCGCGAGGGATTGAAAAACTCAATGCTTAAGGTACACAGGCAGGGCAATTGCTTGGATTCTCTGCGTCTCGTTCTGCGAAACGGAAGCTCCGATTCGAGGATGGCCTCGGCTAGGGTTCTGACACTCATCGCCGTAGACTCGGAGTCGAAGCTCTTGATCGCCGAAAAGGAAGGCCTGGTAACCGAATTGCTGAATTTAGCGTCGCCGGACAAAGATCCGGCGCTGATCGAGAGCGCCTTGTCAGCCTTGGTGGCAATCACGACGACGAAACGGAACAGGTCGAAGGTAGCGAGTGCGGGAGCGATCAAGATGTTCTCGAAGCTTCTATCGGTGCCGAAGTTGAGCGCGTCGGTGGTGGAGAAGACGCTGAAGCTGGTGGAAAGGGCGTCGTCGACGAGCGAAGGAAGGAGGGAAATATGCGAGGATCCGGCGTGCTTGACGGCGGTGTTGAGCAAGGTCATGAAGATTTCGAGCGCGGCGACGGAGCACGCCGTGACCGCGCTGTGGAGAGTGTGTTATCTCTTTCGCGATCGCAAGGCTCCAGAAGCGGTTACGAACACCAACGGCTTGACCAAGATTCTGTTACTGATGCAGAGCAATTGTTCCCCTATGGTGCGCAAAATGTGCGTCGACTTGCTCAAGATTTTTCGGGTTAACTCAAAATCATGCCTCCCTTGCTACGACACCAAGACCACCCATATTATGCCGTTTTGA 1245 0.5518 MVRDDLCISVPSYFKCPISLDVMKSPVSLCTGVTYDRCSIQRWLDSGNNTCPATMQLLHTKDFVPNRNLQSLIQIWSNSVADQVDSPASESVPSEDQLLQAIAELESPSGKVLDSIAKVVRFAEDSEENRVFLAKLNGFVAVLVGFLGNAGAGETRSVEFLERVVTALGLVLEKIEDREGLKNSMLKVHRQGNCLDSLRLVLRNGSSDSRMASARVLTLIAVDSESKLLIAEKEGLVTELLNLASPDKDPALIESALSALVAITTTKRNRSKVASAGAIKMFSKLLSVPKLSASVVEKTLKLVERASSTSEGRREICEDPACLTAVLSKVMKISSAATEHAVTALWRVCYLFRDRKAPEAVTNTNGLTKILLLMQSNCSPMVRKMCVDLLKIFRVNSKSCLPCYDTKTTHIMPF* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1793 414 SUPERFAMILY ARM repeat 187 402 IPR016024 -
Dod09g1793 414 Gene3D - 180 402 IPR011989 -
Dod09g1793 414 PANTHER WDSAM1 PROTEIN 4 414 IPR045185 GO:0061630
Dod09g1793 414 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Dod09g1793 414 SUPERFAMILY RING/U-box 6 77 - -
Dod09g1793 414 CDD RING-Ubox_PUB 14 56 IPR045210 -
Dod09g1793 414 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Dod09g1793 414 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 414 - -
Dod09g1793 414 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Dod09g1793 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 88 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1793 Dod-Chr9 39534610 39536552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1793 1 414 U-box Gene Family AT5G64660 51.422 2.21e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1793 - - cam:101496984 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2516 04 48995008 48996662 Dod09g1793 09 39534610 39536552 PCT