Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1775 ATGGATTTGGACGATTTCCGATCCATATTGGATACGGCGGGGGTGGACGTGTGGCTGTTCATCGACACCGCCATCACCGTCGCGTCGTTGGATTGCGGCGACGAGTTGAGGCGCCGGAGAGACGGAATTATTGAGCGACTTTTTCTCGCCACCACGGCTCCTCCGCCGTGCCGGAACTGCGAAAGCGATCGCAATCCGAGGTCCAACGGCCACCAAATCAAGAAGCAGACCAGCCCTAGTCCTAGCCCTCAACGACAACAACACCACCAGCAGCGCCCTGGAGGTGCCGCTGCCTCTCCGGCGACGCCGCAGTCTCTCGGAAACGACAACGGCGACGCCGACGATGACGACCTAGATCCTTATGGAGGATTGTTCGATGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGACCCTGACCAGTCTGAAGACTCGTTGGTTGAGTTGCTTCAAAATCTTGCGGACATGGATATTACATTCCAAGCGTTAAAGGAGACTGACATTGGAAGGCACGTGAATAGGTTACGGAAGCATTCATCCAATGACGTTCGCAGATTGGTGAAGCTACTCGTCAGGAAGTGGAAGGAAACTGTAGACGTGTGGGTGAAGTTGAATCAACCAGCTGGTGGAACAGCTTCTCTCATGGCTGATGGGGACTCTCCTCCGCTGAAGACCACCCAAAACGGCCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTCTGGGTCTGACCGTAACACCTCAGAAGCAGAACCAAAACCAAAAGTGATTCCTCGCAAAGAGGCTCCTCCAAAACCAACGCCGCCACCATCAGTCCCTACCCCTGCTTCCGCTCCCCAAAATAGACAGAGAGAACAGAGAGAGAGCAACTTTGATGCCGAGAGGCTTGCTTCAGCAAGAAAGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGACATCCATGAGCTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCGGCGGCGGCGGTTCACAGGGAAGGCACTGGTGA 1086 0.5267 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERLFLATTAPPPCRNCESDRNPRSNGHQIKKQTSPSPSPQRQQHHQQRPGGAAASPATPQSLGNDNGDADDDDLDPYGGLFDDEQKKILEIKEQLEDPDQSEDSLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKETVDVWVKLNQPAGGTASLMADGDSPPLKTTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPASAPQNRQREQRESNFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAFFGKNKGGGGGSQGRHW* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1775 361 Pfam TFIIS helical bundle-like domain 152 200 IPR017923 -
Dod09g1775 361 Coils Coil 302 329 - -
Dod09g1775 361 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 212 IPR035441 -
Dod09g1775 361 ProSiteProfiles TFIIS N-terminal domain profile. 127 204 IPR017923 -
Dod09g1775 361 MobiDBLite consensus disorder prediction 71 109 - -
Dod09g1775 361 CDD TFIIS_I 129 202 - -
Dod09g1775 361 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 212 IPR035441 -
Dod09g1775 361 SMART TFS2_5 132 203 IPR003617 GO:0005634
Dod09g1775 361 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 361 - -
Dod09g1775 361 MobiDBLite consensus disorder prediction 54 124 - -
Dod09g1775 361 MobiDBLite consensus disorder prediction 223 256 - -
Dod09g1775 361 MobiDBLite consensus disorder prediction 212 361 - -
Dod09g1775 361 MobiDBLite consensus disorder prediction 270 285 - -
Dod09g1775 361 MobiDBLite consensus disorder prediction 294 341 - -
Dod09g1775 361 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 361 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1775 Dod-Chr9 39400167 39403871 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dod09g1775 Med26 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1775 - - aip:107622503 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1775 09 39400167 39403871 Dod09g1775 09 39400167 39403871 ECH
Dod04g2500 04 48830022 48833170 Dod09g1775 09 39400167 39403871 ECH
Dod04g2500 04 48830022 48833170 Dod09g1775 09 39400167 39403871 PCT