Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1768 ATGGGCTTCGACGAATACGATTACTTGGAGAAGACGGTGGAGGACCAAGACGACACCAGAGACTCCTCCAGGAAGAAGAAGGACAGCTCCGAGAGGTCCTACAGGAAGCGCGACGAGCTCGATGACGATGATCTCGACGCCGCTGCAGACGGCAAGAGGAGCAAGAGGTCCAGGCCCGACGAGTACGAGAACGGCTCCAACTCCAAGAAGGATCGCGATAGGGAGCGTTCCTCCCGCGACAAGGACCGCCACAGCCACAGGAGTGACAGGGACAGAGACAAAGACAGGGACGGTGAGAGGAGTAGCAGGGATAGAGACAGAGACGGTGAAAGGAGTAGCAGAGACAGAGACAGGGACAGGGAGAAGGATAAGGACAGGGATAGGAGGGAGAGGGAGAAGGAACGGGAGAGAAGGGAGAGGGAACGAGAACGAGAGGAGAGAGAGAGGCCTAGGCGGAGCAGGAGTCGTTCTGAGCGAGGAGATAGAGAGAGGGAACCAGATTTCGATTCCAGAGATGGCAGGAGATACAGGGAAAAGAAAGAGGCTGTGGAGCCCGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCATTGAAGGCAACAGAGAGGGATGTTTATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTCCGTCTTATCATGGATAGGAACTCAAGGCGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGACAACCTGTTATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTCAACATGACTGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGCATAGCTGCAAGCATTGGTGCTCCCATTGTGAATGGGTCAGCCCCTGCTCAGCCGGCTATTAGCTTGCCTATTGGTAACCCAGGTATAATACCAGCGCCAGCTCTCCCAACGCAACTTATGCCTACCACAGTGATGGAACCTGTTGGAAATCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCCACCACTGAGATAGAACCAGAGTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAGTTCGGGCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCGGGTGCTGCTCAACGTGCAATGCATATGAGGTGGTTTGCACGCAGATTGATTTCAGCTATCTTCATGGAACCTCAGATATATGAAGCCAAGTTTAAGGGGGAAGTTTGA 1683 0.489 MGFDEYDYLEKTVEDQDDTRDSSRKKKDSSERSYRKRDELDDDDLDAAADGKRSKRSRPDEYENGSNSKKDRDRERSSRDKDRHSHRSDRDRDKDRDGERSSRDRDRDGERSSRDRDRDREKDKDRDRREREKERERREREREREERERPRRSRSRSERGDREREPDFDSRDGRRYREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGAPIVNGSAPAQPAISLPIGNPGIIPAPALPTQLMPTTVMEPVGNPSECLLLKNMFDPTTEIEPEFDLDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLQFETVEAAGAAQRAMHMRWFARRLISAIFMEPQIYEAKFKGEV* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1768 560 SMART rrm1_1 195 267 IPR000504 GO:0003723
Dod09g1768 560 SMART rrm1_1 297 370 IPR000504 GO:0003723
Dod09g1768 560 SMART rrm1_1 467 544 IPR000504 GO:0003723
Dod09g1768 560 CDD RRM2_RBM23_RBM39 298 370 - -
Dod09g1768 560 Coils Coil 124 148 - -
Dod09g1768 560 SUPERFAMILY RNA-binding domain, RBD 295 373 IPR035979 GO:0003676
Dod09g1768 560 Gene3D - 292 388 IPR012677 -
Dod09g1768 560 SUPERFAMILY RNA-binding domain, RBD 187 275 IPR035979 GO:0003676
Dod09g1768 560 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 389 484 IPR029123 -
Dod09g1768 560 MobiDBLite consensus disorder prediction 1 193 - -
Dod09g1768 560 PANTHER CC1-LIKE SPLICING FACTOR 1 560 - -
Dod09g1768 560 SUPERFAMILY RNA-binding domain, RBD 463 546 IPR035979 GO:0003676
Dod09g1768 560 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 560 - -
Dod09g1768 560 CDD RRM3_RBM39_like 465 547 - -
Dod09g1768 560 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 263 IPR000504 GO:0003723
Dod09g1768 560 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 368 IPR000504 GO:0003723
Dod09g1768 560 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 489 542 IPR000504 GO:0003723
Dod09g1768 560 TIGRFAM SF-CC1: splicing factor, CC1-like family 70 556 IPR006509 GO:0003723|GO:0005634|GO:0006397
Dod09g1768 560 Gene3D - 462 559 IPR012677 -
Dod09g1768 560 CDD RRM1_RBM39_like 195 267 - -
Dod09g1768 560 Gene3D - 115 279 IPR012677 -
Dod09g1768 560 MobiDBLite consensus disorder prediction 1 194 - -
Dod09g1768 560 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Dod09g1768 560 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 271 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1768 Dod-Chr9 39340069 39346939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1768 268 369 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 7.93e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1768 K13091 - gmx:100802446 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2490 04 48746303 48751396 Dod09g1768 09 39340069 39346939 PCT