LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g1765	ATGTGCTGTATTTCAAAGGTGGCGAATCCTAGAGAGAAGGGAAACAAGGTTGACAACAGGGAATTCGATGAAGGGATAAATTACAACAACGCATTGTCATCAATGCAGATGATATTTCCAGGTATAAATAGAGAGAGGGAGATGTCTGCTATGGTCTCAGCTTTGACCCATGTGGTGTCCGGAGATGTGCCACCCACCGGTGGTGATTATGCAATTGGAATTGGAGGAGGTGTTGATGATGTTGCTGTTGTTGCAAGGAACATGCCTTCTGGCTCTACAACACCAATGTCTGTGCCACCTTCATCATCTAATTATGTTGGTAGCTCTGCATCTGCTCTCAAGAGAACTAGGGAAGAAGATGATGATACATCCTTTGGTGATTTCTCACATAGAAGAGGAGCAGCTTCAATATCTCCCGGTATTCCAACAAGTAACCCAGAAAGTTCAAGCAATTGGGCCACAAGCAGCACAACAATGAGAGAAAATAGCGAAATGGCAAATAGAGCAGTGTATGAATACACAGCAAGACCAGAGAACGTGGGAGGATCAGAAGAGCCAAGGAGAAAATACAGAGGGGTGAGACAGAGGCCGTGGGGTAAATGGGCAGCGGAGATAAGAGACCCATTCAAAGCGGCAAGAGTTTGGTTAGGCACTTTCGACACAGCAGAAGCAGCCGCAAGAGCATACGACCAAGCTGCACTGCGTTTCAGAGGAAACAAAGCCAAGCTCAACTTCCCAGAAAACGTCACGCTCCGCCACCCTCCCCCTCCGCCACCACCGCCGCCAAACACAAACACCGCCGCTGCCCAGAGGAGCGTTTCTTCCAGTGCTGCCTTCCCCCTCGTGTCCATTGCGACGCCCACTGAGCCTATCGTTCACTCTGAACCTCATCAGGGCTCAAGTAGCTTTCATGGTTATTTTCCTGTGATGAACTTATATGATGATGATCCGAATCGGATGATTATGGCATCAACCGTGGCTTCTCATCTTCAATATTCTTCTTCGTCATCCACACAAGCTTCGCCGTCGTTGTTGTTTTCTTCTTCTTCTTCTTCATCATCGCAGGGGACTGCATCATCGCTTCCTTCGCTTTATTCTTTGCAGTTGCCGCCATGGTCAGCTTCTGGTTATACTTCTTCTTCCTCGGGTTAA	1152	0.48	MCCISKVANPREKGNKVDNREFDEGINYNNALSSMQMIFPGINREREMSAMVSALTHVVSGDVPPTGGDYAIGIGGGVDDVAVVARNMPSGSTTPMSVPPSSSNYVGSSASALKRTREEDDDTSFGDFSHRRGAASISPGIPTSNPESSSNWATSSTTMRENSEMANRAVYEYTARPENVGGSEEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLRHPPPPPPPPPNTNTAAAQRSVSSSAAFPLVSIATPTEPIVHSEPHQGSSSFHGYFPVMNLYDDDPNRMIMASTVASHLQYSSSSSTQASPSLLFSSSSSSSSQGTASSLPSLYSLQLPPWSASGYTSSSSG*	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g1765	383	SUPERFAMILY	DNA-binding domain	189	247	IPR016177	GO:0003677
	Dod09g1765	383	PANTHER	DNA-BINDING DOMAIN	43	373	IPR044808	GO:0003700\|GO:0009873
	Dod09g1765	383	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110	43	373	-	-
	Dod09g1765	383	MobiDBLite	consensus disorder prediction	138	163	-	-
	Dod09g1765	383	MobiDBLite	consensus disorder prediction	89	111	-	-
	Dod09g1765	383	Pfam	AP2 domain	189	238	IPR001471	GO:0003700\|GO:0006355
	Dod09g1765	383	ProSiteProfiles	AP2/ERF domain profile.	189	246	IPR001471	GO:0003700\|GO:0006355
	Dod09g1765	383	Gene3D	AP2/ERF domain	188	248	IPR036955	GO:0003700\|GO:0006355
	Dod09g1765	383	MobiDBLite	consensus disorder prediction	113	128	-	-
	Dod09g1765	383	MobiDBLite	consensus disorder prediction	89	163	-	-
	Dod09g1765	383	MobiDBLite	consensus disorder prediction	336	383	-	-
	Dod09g1765	383	PRINTS	Ethylene responsive element binding protein signature	190	201	IPR001471	GO:0003700\|GO:0006355
	Dod09g1765	383	PRINTS	Ethylene responsive element binding protein signature	212	228	IPR001471	GO:0003700\|GO:0006355
	Dod09g1765	383	SMART	rav1_2	189	252	IPR001471	GO:0003700\|GO:0006355
	Dod09g1765	383	CDD	AP2	189	248	IPR001471	GO:0003700\|GO:0006355
	Dod09g1765	383	MobiDBLite	consensus disorder prediction	250	265	-	-
	Dod09g1765	383	MobiDBLite	consensus disorder prediction	247	272	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g1765	Dod-Chr9	39312708	39314974	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g1765	187	251	AP2-EREBP Transcription Factor Family	AT5G61890	83.077	8.34e-33	121

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Dod09g1765		AP2	4.3e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g1765	-		-	aip:107621817	282.337