LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g1761	ATGGGATGCATTTTTGGCAAGTTCTCTCCCCCTCACAAATCTGAGAGGCCCAAACGGCACAGTGGTCACGTGAAGAGAGTTCAGAAGGGTGCGAGGAAACACCCATCTAGGCATGCGGAAGTGGGGCTGAAAAGGGACACTCAGAGACAACAAATTGTGAGGGGGAATATTGTTAAGAATAATCCATCCCCAGTGACTGCACAGAAGGTTTCATCACGTGTTGTGAGTGCTGCCAGAGGTGCAGAAGAAAGGGAAAGAGCGGTTCCTAGAGAAGAGAAGGGTCAAGTAGAGTATGTTGAGGAGATTCAGGAGAAGAAGATTGCAAGATATGAATCTGTGGACGGGTGGCCAAAGTGGTTGGTTGATAACATCCCCAGAGATGTTTTGGCTACTCTGGTTCCAAAGAGTGCTGATTCCTATATAAAACTCGGCAAGATAGGACGTGGAACATATAGCAATGTGTATAAAGCCAAAGATAAGCGCACAGGAAGGACTGTTGCTTTGAAGAAGGTGCGGTTTGACACCTCGGATTCTGAGAGTATCAAGTTTATGGCAAGGGAGATCATGATACTGCAGAAGTTGGATCATCCCAATGTCATCAAACTTGAAGGACTAGCAACATCAAGGATGCAGTATAGTCTTTATCTGGTTTTTGAGTTCATGCAGTATGACCTGAACCGGATCATCTCTAGACCTGGGGAGAGACTCACCGAAGCACAGATCAAGTGCTACATGCAGCAGCTGCTCTCTGGCCTCCAGCACTGTCACGAAAGGGGAGTTTTGCACCGAGATATTAAACCATCTAACTTGTTAATAGACAAAAGAGGGGTGCTGAAGATTGCAGATTTTGGGCTTGCACATTCTTTTACCACTAAACCTGATGGGCCTCTTACAAATAGAGTGGTGACACTTTGGTATAGGGCTCCTGAACTTCTCTTAGGTTCCACCAATTATGGATTTGGAATTGATCTATGGAGTGCAGGATGCCTATTGGCTGAGATGTTTGTTGGAAGACCAATAATGCCTGGGAGGACAGAGGTTGAACAGCTACACATGATCTTCAAACTTTGTGGTTCACCGCCAGAGAACTACTGGAGAAAACTGAAGCTAACGACAAGCTACCGGCCTTCACAACGTTACAAACCAAGTTACGAGGCAAACTTCCAGAATTTTCCTTCCTCCTCCTTTCCTCTCCTGGTCACACTTCTTGATCTTGATCCTGCACATCGTGGCAGTGCTGCCTCTTCTCTCCGAAGTGAATTTTTCAAGTCTGGTCCGTTAGCATGCGATCCTTCAGATTTACCAGTAATCTACAACGAAGAGGATGATCGGATTCAAAAGAGACGCAAAGGGCATAGGGTTTTGAGAAAAGGGCAAGTATCTCAACCAAGGACAAGTCATGTCAGCCAGTCAGAAATGAACCAAACTGCTGAACAACTCGAGAGAGAATCAGAATTGTCAAAAGAGGAGAAGAAAGGGGACAATAGTGCAAGCACCACATCATCGGGCTCAAAAATATTTACGAACGAAGGGAGCACGAATGCATCTACATCCCCAATCTTCTCTAGTGGGAGAAAATCCCCAAGGACTGAGGCGCATCCCAATGCTCTCAAGAACATAAAGAACTACAGTACACTCTTACAGGCCTCTATGATTGGATCGATCAACCACAATGAAGGCAATGAATTGGCCCCGCTTCGCAAGTCTTTCTCTATGTTGGATTTTCGACTTGATCCAGAGAAGTTACAAAGTCTCTATGGACCGCCTCCTAGGGTCTAA	1779	0.457	MGCIFGKFSPPHKSERPKRHSGHVKRVQKGARKHPSRHAEVGLKRDTQRQQIVRGNIVKNNPSPVTAQKVSSRVVSAARGAEERERAVPREEKGQVEYVEEIQEKKIARYESVDGWPKWLVDNIPRDVLATLVPKSADSYIKLGKIGRGTYSNVYKAKDKRTGRTVALKKVRFDTSDSESIKFMAREIMILQKLDHPNVIKLEGLATSRMQYSLYLVFEFMQYDLNRIISRPGERLTEAQIKCYMQQLLSGLQHCHERGVLHRDIKPSNLLIDKRGVLKIADFGLAHSFTTKPDGPLTNRVVTLWYRAPELLLGSTNYGFGIDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPPENYWRKLKLTTSYRPSQRYKPSYEANFQNFPSSSFPLLVTLLDLDPAHRGSAASSLRSEFFKSGPLACDPSDLPVIYNEEDDRIQKRRKGHRVLRKGQVSQPRTSHVSQSEMNQTAEQLERESELSKEEKKGDNSASTTSSGSKIFTNEGSTNASTSPIFSSGRKSPRTEAHPNALKNIKNYSTLLQASMIGSINHNEGNELAPLRKSFSMLDFRLDPEKLQSLYGPPPRV*	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g1761	592	Pfam	Protein kinase domain	140	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod09g1761	592	MobiDBLite	consensus disorder prediction	459	477	-	-
	Dod09g1761	592	MobiDBLite	consensus disorder prediction	1	45	-	-
	Dod09g1761	592	SUPERFAMILY	Protein kinase-like (PK-like)	134	428	IPR011009	-
	Dod09g1761	592	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	260	272	IPR008271	GO:0004672\|GO:0006468
	Dod09g1761	592	Coils	Coil	470	490	-	-
	Dod09g1761	592	MobiDBLite	consensus disorder prediction	13	33	-	-
	Dod09g1761	592	MobiDBLite	consensus disorder prediction	444	532	-	-
	Dod09g1761	592	ProSitePatterns	Protein kinases ATP-binding region signature.	146	169	IPR017441	GO:0005524
	Dod09g1761	592	CDD	STKc_CDK9_like	140	422	-	-
	Dod09g1761	592	SMART	serkin_6	140	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod09g1761	592	Gene3D	Phosphorylase Kinase; domain 1	129	222	-	-
	Dod09g1761	592	Gene3D	Transferase(Phosphotransferase) domain 1	223	462	-	-
	Dod09g1761	592	MobiDBLite	consensus disorder prediction	478	495	-	-
	Dod09g1761	592	PANTHER	CELL DIVISION PROTEIN KINASE	86	546	-	-
	Dod09g1761	592	MobiDBLite	consensus disorder prediction	496	529	-	-
	Dod09g1761	592	ProSiteProfiles	Protein kinase domain profile.	140	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod09g1761	592	PANTHER	CYCLIN-DEPENDENT KINASE	86	546	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g1761	Dod-Chr9	39280836	39284405	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g1761	135	453	Core Cell Cycle Gene Families	AT5G10270	47.181	6.32e-98	306

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Dod09g1761		Pkinase	4.6e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g1761	K08819		-	gmx:100782603	706.827